miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29609 3' -54.7 NC_006151.1 + 2567 0.71 0.716172
Target:  5'- cAGC-CGUCCACGGugGgGAgCAc--- -3'
miRNA:   3'- -UCGaGCAGGUGCCugCgCUgGUauuu -5'
29609 3' -54.7 NC_006151.1 + 2823 0.67 0.904645
Target:  5'- cGGCcggGUCCagGCGGACGCGGaCGUAGAc -3'
miRNA:   3'- -UCGag-CAGG--UGCCUGCGCUgGUAUUU- -5'
29609 3' -54.7 NC_006151.1 + 3258 0.66 0.910878
Target:  5'- gAGCggggCG-CCGCGGcGCGCGGCgAUGu- -3'
miRNA:   3'- -UCGa---GCaGGUGCC-UGCGCUGgUAUuu -5'
29609 3' -54.7 NC_006151.1 + 4393 0.69 0.821004
Target:  5'- cGGCgcggggGUCCGCGG-CGCGGCCcgGGu -3'
miRNA:   3'- -UCGag----CAGGUGCCuGCGCUGGuaUUu -5'
29609 3' -54.7 NC_006151.1 + 4852 0.7 0.753083
Target:  5'- cGCgggaGUCCccggcgccgccguaGCGGACGCGGCCGUc-- -3'
miRNA:   3'- uCGag--CAGG--------------UGCCUGCGCUGGUAuuu -5'
29609 3' -54.7 NC_006151.1 + 11349 0.68 0.846362
Target:  5'- gGGC-CGcCCGCGGGCGCuACCGc--- -3'
miRNA:   3'- -UCGaGCaGGUGCCUGCGcUGGUauuu -5'
29609 3' -54.7 NC_006151.1 + 13945 0.67 0.891453
Target:  5'- gGGCgggCGccCCGgGGACGCGccgGCCAUGGGg -3'
miRNA:   3'- -UCGa--GCa-GGUgCCUGCGC---UGGUAUUU- -5'
29609 3' -54.7 NC_006151.1 + 14170 0.67 0.904645
Target:  5'- cGCUCGaggacgCC-CGGACGaCGACgGUGAc -3'
miRNA:   3'- uCGAGCa-----GGuGCCUGC-GCUGgUAUUu -5'
29609 3' -54.7 NC_006151.1 + 15039 0.67 0.904645
Target:  5'- uGCgCGUCCACGGcGCGCGggGCCc---- -3'
miRNA:   3'- uCGaGCAGGUGCC-UGCGC--UGGuauuu -5'
29609 3' -54.7 NC_006151.1 + 18817 0.68 0.829646
Target:  5'- -aCUCGgCCGCGGugGCGACgAg--- -3'
miRNA:   3'- ucGAGCaGGUGCCugCGCUGgUauuu -5'
29609 3' -54.7 NC_006151.1 + 18896 0.76 0.42499
Target:  5'- cGaCUCGUCCGCGGugGCGuuCGUGu- -3'
miRNA:   3'- uC-GAGCAGGUGCCugCGCugGUAUuu -5'
29609 3' -54.7 NC_006151.1 + 20137 0.7 0.746201
Target:  5'- gGGCgggCG-CCGCGGGgGCGGCgCGUGGAc -3'
miRNA:   3'- -UCGa--GCaGGUGCCUgCGCUG-GUAUUU- -5'
29609 3' -54.7 NC_006151.1 + 20597 0.73 0.591857
Target:  5'- cGGCacUCGUCCGCGGACGaCGG-CGUGGGg -3'
miRNA:   3'- -UCG--AGCAGGUGCCUGC-GCUgGUAUUU- -5'
29609 3' -54.7 NC_006151.1 + 21350 0.7 0.765717
Target:  5'- cGGCUgGaacggcUCCGCGGGCuGCGGCCAc--- -3'
miRNA:   3'- -UCGAgC------AGGUGCCUG-CGCUGGUauuu -5'
29609 3' -54.7 NC_006151.1 + 22959 0.76 0.398447
Target:  5'- cGgUCGUCCgcACGGugGUGACCGUGGu -3'
miRNA:   3'- uCgAGCAGG--UGCCugCGCUGGUAUUu -5'
29609 3' -54.7 NC_006151.1 + 31017 0.66 0.910878
Target:  5'- gGGgUCGccgCCGCGGcccuCGCGGCCcgGGAg -3'
miRNA:   3'- -UCgAGCa--GGUGCCu---GCGCUGGuaUUU- -5'
29609 3' -54.7 NC_006151.1 + 36118 0.69 0.794043
Target:  5'- cGC-CGUCCucGCGGcCGCGGCCGg--- -3'
miRNA:   3'- uCGaGCAGG--UGCCuGCGCUGGUauuu -5'
29609 3' -54.7 NC_006151.1 + 37863 0.66 0.924831
Target:  5'- gGGCcgCG-CCGCGGACccccgcgccggggagGCGACCGUcGAg -3'
miRNA:   3'- -UCGa-GCaGGUGCCUG---------------CGCUGGUAuUU- -5'
29609 3' -54.7 NC_006151.1 + 39387 0.68 0.846362
Target:  5'- aGGaCUgGcCCGCGGACGgccCGGCCGUGGGg -3'
miRNA:   3'- -UC-GAgCaGGUGCCUGC---GCUGGUAUUU- -5'
29609 3' -54.7 NC_006151.1 + 39975 0.66 0.916865
Target:  5'- cGC-CG-CCGCGGGCGCcccgccGGCCGUGc- -3'
miRNA:   3'- uCGaGCaGGUGCCUGCG------CUGGUAUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.