miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29609 3' -54.7 NC_006151.1 + 81758 0.78 0.31068
Target:  5'- gAGCUgGUCCGCGGGCGCcACCGg--- -3'
miRNA:   3'- -UCGAgCAGGUGCCUGCGcUGGUauuu -5'
29609 3' -54.7 NC_006151.1 + 50029 0.77 0.364752
Target:  5'- cGCggCGcCCcCGGGCGCGGCCAUAAAa -3'
miRNA:   3'- uCGa-GCaGGuGCCUGCGCUGGUAUUU- -5'
29609 3' -54.7 NC_006151.1 + 89936 0.77 0.381351
Target:  5'- cGCgccccagGUCCGCGGGCGCGGCCAg--- -3'
miRNA:   3'- uCGag-----CAGGUGCCUGCGCUGGUauuu -5'
29609 3' -54.7 NC_006151.1 + 22959 0.76 0.398447
Target:  5'- cGgUCGUCCgcACGGugGUGACCGUGGu -3'
miRNA:   3'- uCgAGCAGG--UGCCugCGCUGGUAUUu -5'
29609 3' -54.7 NC_006151.1 + 18896 0.76 0.42499
Target:  5'- cGaCUCGUCCGCGGugGCGuuCGUGu- -3'
miRNA:   3'- uC-GAGCAGGUGCCugCGCugGUAUuu -5'
29609 3' -54.7 NC_006151.1 + 138163 0.75 0.471474
Target:  5'- cGCUCGaggCCuucgugGCGGACGUGGCCAUGGc -3'
miRNA:   3'- uCGAGCa--GG------UGCCUGCGCUGGUAUUu -5'
29609 3' -54.7 NC_006151.1 + 88386 0.74 0.540527
Target:  5'- gAGCgCGUCCGCGGcgucCGCGGCCGcGAGg -3'
miRNA:   3'- -UCGaGCAGGUGCCu---GCGCUGGUaUUU- -5'
29609 3' -54.7 NC_006151.1 + 73394 0.73 0.571185
Target:  5'- cAGCgCGgccgCCGCGuACGCGGCCGUGAAg -3'
miRNA:   3'- -UCGaGCa---GGUGCcUGCGCUGGUAUUU- -5'
29609 3' -54.7 NC_006151.1 + 59763 0.73 0.591857
Target:  5'- cAGCUCGUCCuCGGgcACGuCGGCCAcGAGg -3'
miRNA:   3'- -UCGAGCAGGuGCC--UGC-GCUGGUaUUU- -5'
29609 3' -54.7 NC_006151.1 + 20597 0.73 0.591857
Target:  5'- cGGCacUCGUCCGCGGACGaCGG-CGUGGGg -3'
miRNA:   3'- -UCG--AGCAGGUGCCUGC-GCUgGUAUUU- -5'
29609 3' -54.7 NC_006151.1 + 118452 0.72 0.633507
Target:  5'- cGGCUCGgccuggCCGCGGACGCGcACgCGg--- -3'
miRNA:   3'- -UCGAGCa-----GGUGCCUGCGC-UG-GUauuu -5'
29609 3' -54.7 NC_006151.1 + 107413 0.72 0.633507
Target:  5'- gGGUUCGUCC-CGGACGaCGACUuUGGc -3'
miRNA:   3'- -UCGAGCAGGuGCCUGC-GCUGGuAUUu -5'
29609 3' -54.7 NC_006151.1 + 50469 0.72 0.654357
Target:  5'- cGCUCGcgCCAgCGcGGCGCGACCGa--- -3'
miRNA:   3'- uCGAGCa-GGU-GC-CUGCGCUGGUauuu -5'
29609 3' -54.7 NC_006151.1 + 128726 0.72 0.664759
Target:  5'- cGCUCGUCUggGGGCugaGACCAUGGGg -3'
miRNA:   3'- uCGAGCAGGugCCUGcg-CUGGUAUUU- -5'
29609 3' -54.7 NC_006151.1 + 50110 0.71 0.685471
Target:  5'- cAGCUCcgGUCCGCGGuGCGCGcCCGa--- -3'
miRNA:   3'- -UCGAG--CAGGUGCC-UGCGCuGGUauuu -5'
29609 3' -54.7 NC_006151.1 + 123888 0.71 0.702935
Target:  5'- cGCUCG-CCGCGGccccgccgugcggcGCgGCGGCCGUGAc -3'
miRNA:   3'- uCGAGCaGGUGCC--------------UG-CGCUGGUAUUu -5'
29609 3' -54.7 NC_006151.1 + 58773 0.71 0.706
Target:  5'- gAGCcCGUCCACGG-CGCcGCCGUc-- -3'
miRNA:   3'- -UCGaGCAGGUGCCuGCGcUGGUAuuu -5'
29609 3' -54.7 NC_006151.1 + 2567 0.71 0.716172
Target:  5'- cAGC-CGUCCACGGugGgGAgCAc--- -3'
miRNA:   3'- -UCGaGCAGGUGCCugCgCUgGUauuu -5'
29609 3' -54.7 NC_006151.1 + 119061 0.7 0.726269
Target:  5'- cGGC-CGccUCCGCGGGCGCGcCCGUc-- -3'
miRNA:   3'- -UCGaGC--AGGUGCCUGCGCuGGUAuuu -5'
29609 3' -54.7 NC_006151.1 + 108746 0.7 0.726269
Target:  5'- uGGCcCGgCUGCGGAUGCGAgCCGUGGAg -3'
miRNA:   3'- -UCGaGCaGGUGCCUGCGCU-GGUAUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.