miRNA display CGI


Results 41 - 60 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29609 5' -62.1 NC_006151.1 + 77217 0.66 0.593783
Target:  5'- cGCgccgCCGCGUGUgUGCGCCgggaGGCgccccccgGCGGGu -3'
miRNA:   3'- -UGa---GGUGCACG-ACGCGGg---UCG--------CGCCC- -5'
29609 5' -62.1 NC_006151.1 + 137276 0.66 0.593783
Target:  5'- uGC-CCGCGggcacGCUcgagGCGgCCAuGCGCGGGu -3'
miRNA:   3'- -UGaGGUGCa----CGA----CGCgGGU-CGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 2217 0.66 0.593783
Target:  5'- uCUCCACG-GC-GCcCCCGGCgGCGGc -3'
miRNA:   3'- uGAGGUGCaCGaCGcGGGUCG-CGCCc -5'
29609 5' -62.1 NC_006151.1 + 54601 0.66 0.593783
Target:  5'- cCUCgGCGUGgucccggUGCGCCgGGCGCgccccGGGg -3'
miRNA:   3'- uGAGgUGCACg------ACGCGGgUCGCG-----CCC- -5'
29609 5' -62.1 NC_006151.1 + 119067 0.66 0.593783
Target:  5'- cCUCCGCGgGC-GCGCCCgucucgcaGGCcGCGGc -3'
miRNA:   3'- uGAGGUGCaCGaCGCGGG--------UCG-CGCCc -5'
29609 5' -62.1 NC_006151.1 + 64924 0.67 0.587901
Target:  5'- cCUCCACG-GCguacucgcgcgucaGCGCCUGGCcgcgcuGCGGGc -3'
miRNA:   3'- uGAGGUGCaCGa-------------CGCGGGUCG------CGCCC- -5'
29609 5' -62.1 NC_006151.1 + 113035 0.67 0.583985
Target:  5'- uGCgCCGgGUGCUGCGCggcggcggAGCGCGaGGa -3'
miRNA:   3'- -UGaGGUgCACGACGCGgg------UCGCGC-CC- -5'
29609 5' -62.1 NC_006151.1 + 127977 0.67 0.583985
Target:  5'- -gUCCACGUacucgugcggcgGCUccGCGUCgCGGuCGCGGGg -3'
miRNA:   3'- ugAGGUGCA------------CGA--CGCGG-GUC-GCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 78445 0.67 0.583007
Target:  5'- --aCCGCGUGCUGCGCgaggcgaccgucuUCGGCGaGGu -3'
miRNA:   3'- ugaGGUGCACGACGCG-------------GGUCGCgCCc -5'
29609 5' -62.1 NC_006151.1 + 131927 0.67 0.574219
Target:  5'- cCUCCGCgGUGCUGCcguagcugGCCacgggcgAGgGCGGGc -3'
miRNA:   3'- uGAGGUG-CACGACG--------CGGg------UCgCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 2621 0.67 0.574219
Target:  5'- --aCCGgG-GUccgGgGCCCGGCGCGGGu -3'
miRNA:   3'- ugaGGUgCaCGa--CgCGGGUCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 97268 0.67 0.574219
Target:  5'- gGC-CCACacggGCaGCGCCuCGGCgGCGGGc -3'
miRNA:   3'- -UGaGGUGca--CGaCGCGG-GUCG-CGCCC- -5'
29609 5' -62.1 NC_006151.1 + 11691 0.67 0.574219
Target:  5'- gACggggCCGCGggacgGC-GCGUgCGGCGCGGa -3'
miRNA:   3'- -UGa---GGUGCa----CGaCGCGgGUCGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 80685 0.67 0.564491
Target:  5'- --gUCugG-GUUcGCgGCCCGGCGCGGGc -3'
miRNA:   3'- ugaGGugCaCGA-CG-CGGGUCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 50007 0.67 0.562551
Target:  5'- uGCgcgCCGCGcGCgcggcccgcgcgGCGCCCccgGGCGCGGc -3'
miRNA:   3'- -UGa--GGUGCaCGa-----------CGCGGG---UCGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 103271 0.67 0.562551
Target:  5'- gGCggCCACGUGCUGaGCCaggagacgcgcGCGCGGc -3'
miRNA:   3'- -UGa-GGUGCACGACgCGGgu---------CGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 114431 0.67 0.554808
Target:  5'- --aCCGCGUGCUGgacCGCCU-GCuCGGGg -3'
miRNA:   3'- ugaGGUGCACGAC---GCGGGuCGcGCCC- -5'
29609 5' -62.1 NC_006151.1 + 126151 0.67 0.554808
Target:  5'- gGCUgCugGUGCUGgccgGCCUGGuCGCGGc -3'
miRNA:   3'- -UGAgGugCACGACg---CGGGUC-GCGCCc -5'
29609 5' -62.1 NC_006151.1 + 60831 0.67 0.554808
Target:  5'- aGCUCCACGaGCUGCGCgUugauCGUGGc -3'
miRNA:   3'- -UGAGGUGCaCGACGCGgGuc--GCGCCc -5'
29609 5' -62.1 NC_006151.1 + 3110 0.67 0.545174
Target:  5'- gGCcgCCGCG-GCgcggGUcccagGCCgGGCGCGGGg -3'
miRNA:   3'- -UGa-GGUGCaCGa---CG-----CGGgUCGCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.