miRNA display CGI


Results 21 - 40 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29609 5' -62.1 NC_006151.1 + 23894 0.66 0.623307
Target:  5'- -gUUCACGgGCUGgGCgUCGGuCGCGGGc -3'
miRNA:   3'- ugAGGUGCaCGACgCG-GGUC-GCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 25110 0.68 0.479528
Target:  5'- --gCUGCGUGCgaGCGCUgGGCGUGGa -3'
miRNA:   3'- ugaGGUGCACGa-CGCGGgUCGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 27268 0.71 0.346373
Target:  5'- uACUCgGgGUGCUcgacgacguaGCGCCCgcgcuuggggGGCGUGGGg -3'
miRNA:   3'- -UGAGgUgCACGA----------CGCGGG----------UCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 29588 0.7 0.393127
Target:  5'- --aUCGCGgcgGCUGCgGCCgCGGCGgCGGGg -3'
miRNA:   3'- ugaGGUGCa--CGACG-CGG-GUCGC-GCCC- -5'
29609 5' -62.1 NC_006151.1 + 30620 0.66 0.643032
Target:  5'- -gUCgGCGUGC-GCGCUguGCGgGuGGg -3'
miRNA:   3'- ugAGgUGCACGaCGCGGguCGCgC-CC- -5'
29609 5' -62.1 NC_006151.1 + 31949 0.66 0.63317
Target:  5'- --cCCGCGUGaUGaCGCCgGGgaCGCGGGa -3'
miRNA:   3'- ugaGGUGCACgAC-GCGGgUC--GCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 33956 0.72 0.297037
Target:  5'- gGCUCgggGCGggacGCgGCGCCC-GCGCGGGg -3'
miRNA:   3'- -UGAGg--UGCa---CGaCGCGGGuCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 39108 0.66 0.644018
Target:  5'- aGCUCUGCGccgagcccgccgaggGCgccccGCGCCCGGCcUGGGa -3'
miRNA:   3'- -UGAGGUGCa--------------CGa----CGCGGGUCGcGCCC- -5'
29609 5' -62.1 NC_006151.1 + 39271 0.7 0.393127
Target:  5'- cGC-CCAggggGUGCUGCuGCUCucGGCGCGGGa -3'
miRNA:   3'- -UGaGGUg---CACGACG-CGGG--UCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 49044 0.78 0.119473
Target:  5'- gGC-CCACGgGCUggccuucaGCGUCCGGCGCGGGg -3'
miRNA:   3'- -UGaGGUGCaCGA--------CGCGGGUCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 49193 0.66 0.63317
Target:  5'- uGCUgaaCACGacGCUGacCGUgCGGCGCGGGg -3'
miRNA:   3'- -UGAg--GUGCa-CGAC--GCGgGUCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 50007 0.67 0.562551
Target:  5'- uGCgcgCCGCGcGCgcggcccgcgcgGCGCCCccgGGCGCGGc -3'
miRNA:   3'- -UGa--GGUGCaCGa-----------CGCGGG---UCGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 50459 0.69 0.443788
Target:  5'- cGC-CCGCGggcGCU-CGCgCCAGCGCGGc -3'
miRNA:   3'- -UGaGGUGCa--CGAcGCG-GGUCGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 51475 0.66 0.603607
Target:  5'- uGC-CCACagcccGaCUGCGCCCAGcCGcCGGGc -3'
miRNA:   3'- -UGaGGUGca---C-GACGCGGGUC-GC-GCCC- -5'
29609 5' -62.1 NC_006151.1 + 52582 0.69 0.461475
Target:  5'- uACUCgGC--GCUGcCGCCCuGCGCGuGGa -3'
miRNA:   3'- -UGAGgUGcaCGAC-GCGGGuCGCGC-CC- -5'
29609 5' -62.1 NC_006151.1 + 54601 0.66 0.593783
Target:  5'- cCUCgGCGUGgucccggUGCGCCgGGCGCgccccGGGg -3'
miRNA:   3'- uGAGgUGCACg------ACGCGGgUCGCG-----CCC- -5'
29609 5' -62.1 NC_006151.1 + 54814 0.68 0.506297
Target:  5'- ---gCGCGUGCUggcgcgcgacGCGCUCacgggcgAGCGCGGGg -3'
miRNA:   3'- ugagGUGCACGA----------CGCGGG-------UCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 56444 0.69 0.432498
Target:  5'- cGCUCgacgagacgCGCGUGCUGCcccacuaccccaucGCCCAGCGCc-- -3'
miRNA:   3'- -UGAG---------GUGCACGACG--------------CGGGUCGCGccc -5'
29609 5' -62.1 NC_006151.1 + 57269 0.69 0.470457
Target:  5'- cCUCgACGgccucGCgcagcaggGCGUCCAGCGCGGc -3'
miRNA:   3'- uGAGgUGCa----CGa-------CGCGGGUCGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 57853 0.66 0.623307
Target:  5'- uGCUCCACGgcGCUggucgcGCGCCCcGC-CGGc -3'
miRNA:   3'- -UGAGGUGCa-CGA------CGCGGGuCGcGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.