miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29609 5' -62.1 NC_006151.1 + 2217 0.66 0.593783
Target:  5'- uCUCCACG-GC-GCcCCCGGCgGCGGc -3'
miRNA:   3'- uGAGGUGCaCGaCGcGGGUCG-CGCCc -5'
29609 5' -62.1 NC_006151.1 + 2292 0.69 0.452585
Target:  5'- cGC-CCGCGgcgGCgacgGCGCCCGGggucagcaccaGCGGGg -3'
miRNA:   3'- -UGaGGUGCa--CGa---CGCGGGUCg----------CGCCC- -5'
29609 5' -62.1 NC_006151.1 + 2621 0.67 0.574219
Target:  5'- --aCCGgG-GUccgGgGCCCGGCGCGGGu -3'
miRNA:   3'- ugaGGUgCaCGa--CgCGGGUCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 3110 0.67 0.545174
Target:  5'- gGCcgCCGCG-GCgcggGUcccagGCCgGGCGCGGGg -3'
miRNA:   3'- -UGa-GGUGCaCGa---CG-----CGGgUCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 4064 0.69 0.440297
Target:  5'- -gUCCACGcuguagcgcaccaGCgGCGCCaCGGUGCGGGc -3'
miRNA:   3'- ugAGGUGCa------------CGaCGCGG-GUCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 4375 0.68 0.497919
Target:  5'- cCUCgACG-GUcGCcucCCCGGCGCGGGg -3'
miRNA:   3'- uGAGgUGCaCGaCGc--GGGUCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 4507 0.75 0.20507
Target:  5'- cGCUcaCCGCGUGCggcaGgGCCCAGaGCGGGu -3'
miRNA:   3'- -UGA--GGUGCACGa---CgCGGGUCgCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 5084 0.71 0.330977
Target:  5'- cGCggggCCGCGgcggGCgccgGCggagacgguggcgGCCCGGCGCGGGc -3'
miRNA:   3'- -UGa---GGUGCa---CGa---CG-------------CGGGUCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 5334 0.69 0.426489
Target:  5'- cGCggCCGCG-GCggaggGCGCCCucuccGGCGCGGc -3'
miRNA:   3'- -UGa-GGUGCaCGa----CGCGGG-----UCGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 9466 0.68 0.516618
Target:  5'- cUUCCGCGUccGCUucggccccccGCgGCCgCGGCGUGGGa -3'
miRNA:   3'- uGAGGUGCA--CGA----------CG-CGG-GUCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 10508 0.66 0.63317
Target:  5'- cGCcgCCGCaG-GC-GCGucCCCGGCGCGGGc -3'
miRNA:   3'- -UGa-GGUG-CaCGaCGC--GGGUCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 10541 0.68 0.479528
Target:  5'- uCUCCACGccccguuccGCccgGCGCCCaauGGCGCGGc -3'
miRNA:   3'- uGAGGUGCa--------CGa--CGCGGG---UCGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 10625 0.7 0.385055
Target:  5'- cGC-CCGCGUGCgcucGUG-CCGGCGCGGc -3'
miRNA:   3'- -UGaGGUGCACGa---CGCgGGUCGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 11691 0.67 0.574219
Target:  5'- gACggggCCGCGggacgGC-GCGUgCGGCGCGGa -3'
miRNA:   3'- -UGa---GGUGCa----CGaCGCGgGUCGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 15026 0.66 0.603607
Target:  5'- gACcCCGaggagGUGC-GCGUCCAcggcGCGCGGGg -3'
miRNA:   3'- -UGaGGUg----CACGaCGCGGGU----CGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 18555 0.68 0.488683
Target:  5'- aACggCCGCGagGC--CGCCCGGCgGCGGGa -3'
miRNA:   3'- -UGa-GGUGCa-CGacGCGGGUCG-CGCCC- -5'
29609 5' -62.1 NC_006151.1 + 20202 0.66 0.623307
Target:  5'- gAUUCCGCGcGCaGCGCCgGGcCGCGcaGGc -3'
miRNA:   3'- -UGAGGUGCaCGaCGCGGgUC-GCGC--CC- -5'
29609 5' -62.1 NC_006151.1 + 20906 0.7 0.417991
Target:  5'- aGCUCCACGcgcccGCUGUaguuGCUCGGCGaGGGc -3'
miRNA:   3'- -UGAGGUGCa----CGACG----CGGGUCGCgCCC- -5'
29609 5' -62.1 NC_006151.1 + 21360 0.73 0.261631
Target:  5'- gGCUCCGCGgGCUGCGgCCAcccGCugggcacgacggccgGCGGGg -3'
miRNA:   3'- -UGAGGUGCaCGACGCgGGU---CG---------------CGCCC- -5'
29609 5' -62.1 NC_006151.1 + 22300 0.66 0.652887
Target:  5'- gGCgUCCACGU-CcGCGCCgAGCGUcguccGGGc -3'
miRNA:   3'- -UG-AGGUGCAcGaCGCGGgUCGCG-----CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.