miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29609 5' -62.1 NC_006151.1 + 49044 0.78 0.119473
Target:  5'- gGC-CCACGgGCUggccuucaGCGUCCGGCGCGGGg -3'
miRNA:   3'- -UGaGGUGCaCGA--------CGCGGGUCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 102484 0.77 0.138811
Target:  5'- aGCUCUcgGCGUGCUucaugGaCGCCgCGGCGCGGGa -3'
miRNA:   3'- -UGAGG--UGCACGA-----C-GCGG-GUCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 59528 0.76 0.177492
Target:  5'- aGCgCCGCGUGa-GgGCCCAGCGCGcGGg -3'
miRNA:   3'- -UGaGGUGCACgaCgCGGGUCGCGC-CC- -5'
29609 5' -62.1 NC_006151.1 + 62283 0.76 0.181848
Target:  5'- cUUCUGCGUGCUcGUGgCCAGCGCGGc -3'
miRNA:   3'- uGAGGUGCACGA-CGCgGGUCGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 83343 0.75 0.186298
Target:  5'- cGCgUCCACGUGCUccccgGCGCgC-GCGCGGGc -3'
miRNA:   3'- -UG-AGGUGCACGA-----CGCGgGuCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 58487 0.75 0.200229
Target:  5'- gGCgUCCACGUGgaUGaUGCCCGcGCGCGGGc -3'
miRNA:   3'- -UG-AGGUGCACg-AC-GCGGGU-CGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 4507 0.75 0.20507
Target:  5'- cGCUcaCCGCGUGCggcaGgGCCCAGaGCGGGu -3'
miRNA:   3'- -UGA--GGUGCACGa---CgCGGGUCgCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 102678 0.75 0.210013
Target:  5'- gACgCCGUGgacGCggggGCGCCCGGCGCGGGc -3'
miRNA:   3'- -UGaGGUGCa--CGa---CGCGGGUCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 72019 0.74 0.220206
Target:  5'- --aCCACGU-CgGCGCCCcGCGCGGGc -3'
miRNA:   3'- ugaGGUGCAcGaCGCGGGuCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 75129 0.73 0.253334
Target:  5'- -gUCgGCGgccgGCggcGCgGCCCAGCGCGGGc -3'
miRNA:   3'- ugAGgUGCa---CGa--CG-CGGGUCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 21360 0.73 0.261631
Target:  5'- gGCUCCGCGgGCUGCGgCCAcccGCugggcacgacggccgGCGGGg -3'
miRNA:   3'- -UGAGGUGCaCGACGCgGGU---CG---------------CGCCC- -5'
29609 5' -62.1 NC_006151.1 + 83637 0.73 0.265254
Target:  5'- gGCggCCugGUGCUGCGCCguGaCGaGGGc -3'
miRNA:   3'- -UGa-GGugCACGACGCGGguC-GCgCCC- -5'
29609 5' -62.1 NC_006151.1 + 96582 0.73 0.265254
Target:  5'- cGCcUCGCG-GCgcgagGCGCCgGGCGCGGGc -3'
miRNA:   3'- -UGaGGUGCaCGa----CGCGGgUCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 75271 0.72 0.283981
Target:  5'- gGCUCCugGcGCaGCGCcgCCAGCGUGGc -3'
miRNA:   3'- -UGAGGugCaCGaCGCG--GGUCGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 131097 0.72 0.290452
Target:  5'- -gUCCACGUcgGCgggGgGCCCggccgcGGCGCGGGa -3'
miRNA:   3'- ugAGGUGCA--CGa--CgCGGG------UCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 33956 0.72 0.297037
Target:  5'- gGCUCgggGCGggacGCgGCGCCC-GCGCGGGg -3'
miRNA:   3'- -UGAGg--UGCa---CGaCGCGGGuCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 121878 0.72 0.310555
Target:  5'- cGCUCacguGCGcGCUGCGCCUGgcgcucgcguacGCGCGGGc -3'
miRNA:   3'- -UGAGg---UGCaCGACGCGGGU------------CGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 89028 0.72 0.310555
Target:  5'- cGCUCCcggcacACGaUGCgcuUGCGCCCGuGCGCGGu -3'
miRNA:   3'- -UGAGG------UGC-ACG---ACGCGGGU-CGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 117239 0.72 0.310555
Target:  5'- cGCgUCCACGUcgGC-GgGCCCgaGGCGCGGGc -3'
miRNA:   3'- -UG-AGGUGCA--CGaCgCGGG--UCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 125572 0.72 0.317487
Target:  5'- aACUCCAUGcGC-GUGCCCggcgAGCGCGGc -3'
miRNA:   3'- -UGAGGUGCaCGaCGCGGG----UCGCGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.