miRNA display CGI


Results 41 - 60 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29610 3' -65.4 NC_006151.1 + 39501 0.68 0.333016
Target:  5'- --cGGCCGuGCUggacucuagcuccauCGUGGGCCcGGCCUGc -3'
miRNA:   3'- cuuCCGGU-CGG---------------GCACCCGGaCCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 40076 0.73 0.161626
Target:  5'- cGggGGCCucgGGCgCCG-GGGCC-GGCCCc -3'
miRNA:   3'- -CuuCCGG---UCG-GGCaCCCGGaCCGGGc -5'
29610 3' -65.4 NC_006151.1 + 40149 0.7 0.276894
Target:  5'- cGAcGGCCGGCCCcgcGGCCcgcucgGGCCCa -3'
miRNA:   3'- -CUuCCGGUCGGGcacCCGGa-----CCGGGc -5'
29610 3' -65.4 NC_006151.1 + 46731 0.7 0.241613
Target:  5'- cGGGGCCGGCCCG-GGGUC-GGCgaacaCCGc -3'
miRNA:   3'- cUUCCGGUCGGGCaCCCGGaCCG-----GGC- -5'
29610 3' -65.4 NC_006151.1 + 48392 0.69 0.302627
Target:  5'- cGGAGGUCAuCCUGUGGGCgucgGGCaCCGc -3'
miRNA:   3'- -CUUCCGGUcGGGCACCCGga--CCG-GGC- -5'
29610 3' -65.4 NC_006151.1 + 48550 0.66 0.4439
Target:  5'- gGAGGGCCc-CCCGccgaguaagagacccUGcGGCCUGccGCCCGg -3'
miRNA:   3'- -CUUCCGGucGGGC---------------AC-CCGGAC--CGGGC- -5'
29610 3' -65.4 NC_006151.1 + 48673 0.68 0.351255
Target:  5'- cGGGGCagGGgCCG-GGGCCUcgaagccGGCCCGa -3'
miRNA:   3'- cUUCCGg-UCgGGCaCCCGGA-------CCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 49014 0.72 0.191201
Target:  5'- --cGGCCAGgaCCCGUaccacgggccGGGCCaGGCCCa -3'
miRNA:   3'- cuuCCGGUC--GGGCA----------CCCGGaCCGGGc -5'
29610 3' -65.4 NC_006151.1 + 49653 0.7 0.276894
Target:  5'- aGGAGGUCgAGCCCuccGGGCC-GcGCCCGg -3'
miRNA:   3'- -CUUCCGG-UCGGGca-CCCGGaC-CGGGC- -5'
29610 3' -65.4 NC_006151.1 + 50329 0.69 0.28316
Target:  5'- aGAcGGCC-GCCCG-GcGCCUGGCCgCGg -3'
miRNA:   3'- -CUuCCGGuCGGGCaCcCGGACCGG-GC- -5'
29610 3' -65.4 NC_006151.1 + 51353 0.66 0.457849
Target:  5'- --cGGCCAGgaCCGUGaGCaCcGGCCCGu -3'
miRNA:   3'- cuuCCGGUCg-GGCACcCG-GaCCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 55037 0.67 0.37484
Target:  5'- --cGGCCGGCgCCGUGgagaagaugcucGGCgaGGaCCCGg -3'
miRNA:   3'- cuuCCGGUCG-GGCAC------------CCGgaCC-GGGC- -5'
29610 3' -65.4 NC_006151.1 + 55497 0.68 0.367116
Target:  5'- --cGGCCAGCcgCCGcGGGaCCUcGGCCaCGa -3'
miRNA:   3'- cuuCCGGUCG--GGCaCCC-GGA-CCGG-GC- -5'
29610 3' -65.4 NC_006151.1 + 56189 0.69 0.289537
Target:  5'- --uGGCCGugccGCCgGUGGcgcugccgcaccGCCUGGCCCu -3'
miRNA:   3'- cuuCCGGU----CGGgCACC------------CGGACCGGGc -5'
29610 3' -65.4 NC_006151.1 + 58254 0.68 0.344608
Target:  5'- ---cGCCGGCCCGcGGGCCgcaGCaCCGu -3'
miRNA:   3'- cuucCGGUCGGGCaCCCGGac-CG-GGC- -5'
29610 3' -65.4 NC_006151.1 + 58642 0.71 0.23611
Target:  5'- aGAAGGCCAGCgCCGggaGGGCgCggcgcagGGCCg- -3'
miRNA:   3'- -CUUCCGGUCG-GGCa--CCCG-Ga------CCGGgc -5'
29610 3' -65.4 NC_006151.1 + 64866 0.67 0.390614
Target:  5'- gGAGGGCCGcuGCCCGgcgGGaGCagGGCCgCGa -3'
miRNA:   3'- -CUUCCGGU--CGGGCa--CC-CGgaCCGG-GC- -5'
29610 3' -65.4 NC_006151.1 + 73199 0.7 0.264697
Target:  5'- cGAcuGCU-GCCCGcGGGCCaGGCCCGc -3'
miRNA:   3'- -CUucCGGuCGGGCaCCCGGaCCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 76979 0.7 0.276274
Target:  5'- aGAAGGCCAGCgCGgugaGGagcGCCgcgagggUGGCCCGc -3'
miRNA:   3'- -CUUCCGGUCGgGCa---CC---CGG-------ACCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 77532 0.66 0.466685
Target:  5'- --cGGCC-GCgCGUGGGCCgc-CCCGc -3'
miRNA:   3'- cuuCCGGuCGgGCACCCGGaccGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.