miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29610 3' -65.4 NC_006151.1 + 18754 0.7 0.241613
Target:  5'- cGGGGCCccacgggguGCCCG-GGGCCcgGGCCgGg -3'
miRNA:   3'- cUUCCGGu--------CGGGCaCCCGGa-CCGGgC- -5'
29610 3' -65.4 NC_006151.1 + 19374 0.7 0.258763
Target:  5'- aGAGGCCcGUgUCGuUGGGCgUGGCCCGc -3'
miRNA:   3'- cUUCCGGuCG-GGC-ACCCGgACCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 21540 0.71 0.215144
Target:  5'- cGGGGCCgGGgCCG-GGGCCUGGgCCu -3'
miRNA:   3'- cUUCCGG-UCgGGCaCCCGGACCgGGc -5'
29610 3' -65.4 NC_006151.1 + 22095 0.67 0.398662
Target:  5'- -uGGGCC-GCCgGUGGGCCaccGCCuCGu -3'
miRNA:   3'- cuUCCGGuCGGgCACCCGGac-CGG-GC- -5'
29610 3' -65.4 NC_006151.1 + 22553 0.69 0.316169
Target:  5'- cGGAGGCCacguggcgguAGCCguCGUuccGGGCCcgGGCCCu -3'
miRNA:   3'- -CUUCCGG----------UCGG--GCA---CCCGGa-CCGGGc -5'
29610 3' -65.4 NC_006151.1 + 24637 0.69 0.296026
Target:  5'- -uAGGCgAGCCCGcGGaGCaC-GGCCCGg -3'
miRNA:   3'- cuUCCGgUCGGGCaCC-CG-GaCCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 26314 0.69 0.302627
Target:  5'- gGGAGGaaagaaCAGCgCG-GGGCgaGGCCCGc -3'
miRNA:   3'- -CUUCCg-----GUCGgGCaCCCGgaCCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 27331 0.75 0.122509
Target:  5'- gGggGGCUgcuccccgggaccgGGgUCGUGGGCCggGGCCCGg -3'
miRNA:   3'- -CuuCCGG--------------UCgGGCACCCGGa-CCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 27572 0.67 0.415073
Target:  5'- cGggGGCCGGgUgGgUGGGCgaGGCUCc -3'
miRNA:   3'- -CuuCCGGUCgGgC-ACCCGgaCCGGGc -5'
29610 3' -65.4 NC_006151.1 + 28233 0.74 0.139624
Target:  5'- aGggGGCCGGgCCGacGGGCCcauUGGCCgGg -3'
miRNA:   3'- -CuuCCGGUCgGGCa-CCCGG---ACCGGgC- -5'
29610 3' -65.4 NC_006151.1 + 28262 0.67 0.415073
Target:  5'- -nGGGCCucaCaCGUGGGCCccggggacgcgGGCCCGg -3'
miRNA:   3'- cuUCCGGucgG-GCACCCGGa----------CCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 31218 0.7 0.241613
Target:  5'- -cAGGCCGGgccCCCGgccGGCC-GGCCCGg -3'
miRNA:   3'- cuUCCGGUC---GGGCac-CCGGaCCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 31259 0.68 0.33733
Target:  5'- -cGGGCgAGCCg--GGGCCcccGGCCCGc -3'
miRNA:   3'- cuUCCGgUCGGgcaCCCGGa--CCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 36332 0.67 0.398662
Target:  5'- -cGGGCCGGCUCc-GGGCCccGGCCg- -3'
miRNA:   3'- cuUCCGGUCGGGcaCCCGGa-CCGGgc -5'
29610 3' -65.4 NC_006151.1 + 37335 0.69 0.28316
Target:  5'- -cGGGCCGcugcucaccccGCUCG-GGGagcCCUGGCCCGg -3'
miRNA:   3'- cuUCCGGU-----------CGGGCaCCC---GGACCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 37459 0.68 0.344608
Target:  5'- -cAGGCCgcGGCCCGcuaccgcgccGcGGCCgGGCCCGu -3'
miRNA:   3'- cuUCCGG--UCGGGCa---------C-CCGGaCCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 38126 0.69 0.316169
Target:  5'- cGGGGCCGGCCCGgccgagcgGcGGCa-GGCCgCGg -3'
miRNA:   3'- cUUCCGGUCGGGCa-------C-CCGgaCCGG-GC- -5'
29610 3' -65.4 NC_006151.1 + 38310 0.69 0.316169
Target:  5'- --cGGCCcgGGCCCGcGGaGCCcGcGCCCGg -3'
miRNA:   3'- cuuCCGG--UCGGGCaCC-CGGaC-CGGGC- -5'
29610 3' -65.4 NC_006151.1 + 38569 0.66 0.431892
Target:  5'- aGAAGcGCCGcgcGCCCG-GGGCCcgccGCCCc -3'
miRNA:   3'- -CUUC-CGGU---CGGGCaCCCGGac--CGGGc -5'
29610 3' -65.4 NC_006151.1 + 39453 0.67 0.406816
Target:  5'- --cGGCC-GCCCaGUGcGCCgugcgcUGGCCCGg -3'
miRNA:   3'- cuuCCGGuCGGG-CACcCGG------ACCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.