miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29610 3' -65.4 NC_006151.1 + 58642 0.71 0.23611
Target:  5'- aGAAGGCCAGCgCCGggaGGGCgCggcgcagGGCCg- -3'
miRNA:   3'- -CUUCCGGUCG-GGCa--CCCG-Ga------CCGGgc -5'
29610 3' -65.4 NC_006151.1 + 31218 0.7 0.241613
Target:  5'- -cAGGCCGGgccCCCGgccGGCC-GGCCCGg -3'
miRNA:   3'- cuUCCGGUC---GGGCac-CCGGaCCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 10900 0.7 0.241613
Target:  5'- gGggGuGCCGGCgCGgaccgGGGUCgGGCCCa -3'
miRNA:   3'- -CuuC-CGGUCGgGCa----CCCGGaCCGGGc -5'
29610 3' -65.4 NC_006151.1 + 46731 0.7 0.241613
Target:  5'- cGGGGCCGGCCCG-GGGUC-GGCgaacaCCGc -3'
miRNA:   3'- cUUCCGGUCGGGCaCCCGGaCCG-----GGC- -5'
29610 3' -65.4 NC_006151.1 + 134782 0.7 0.241613
Target:  5'- --cGGCUccacgGGCCUGUGaGGCCgcggcGGCCCGc -3'
miRNA:   3'- cuuCCGG-----UCGGGCAC-CCGGa----CCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 18754 0.7 0.241613
Target:  5'- cGGGGCCccacgggguGCCCG-GGGCCcgGGCCgGg -3'
miRNA:   3'- cUUCCGGu--------CGGGCaCCCGGa-CCGGgC- -5'
29610 3' -65.4 NC_006151.1 + 98455 0.7 0.247222
Target:  5'- --uGGCCGGCCUggcgcuGUGGcGCCUGcGCCaCGa -3'
miRNA:   3'- cuuCCGGUCGGG------CACC-CGGAC-CGG-GC- -5'
29610 3' -65.4 NC_006151.1 + 125196 0.7 0.252938
Target:  5'- ---cGCCGGCgUCGUGGGCCccgcGGCCCc -3'
miRNA:   3'- cuucCGGUCG-GGCACCCGGa---CCGGGc -5'
29610 3' -65.4 NC_006151.1 + 126403 0.7 0.252938
Target:  5'- --uGGCCAGCCgCGUcgGGGCgaUGGCCaCGc -3'
miRNA:   3'- cuuCCGGUCGG-GCA--CCCGg-ACCGG-GC- -5'
29610 3' -65.4 NC_006151.1 + 5847 0.7 0.255255
Target:  5'- gGGAGGCUGcggagggggacgagcGCCCG-GGGCCgccgggGGCCCc -3'
miRNA:   3'- -CUUCCGGU---------------CGGGCaCCCGGa-----CCGGGc -5'
29610 3' -65.4 NC_006151.1 + 82389 0.7 0.258763
Target:  5'- cGAAGGCCAcgagcuccgcGCCCGaGGGC--GGCCCc -3'
miRNA:   3'- -CUUCCGGU----------CGGGCaCCCGgaCCGGGc -5'
29610 3' -65.4 NC_006151.1 + 19374 0.7 0.258763
Target:  5'- aGAGGCCcGUgUCGuUGGGCgUGGCCCGc -3'
miRNA:   3'- cUUCCGGuCG-GGC-ACCCGgACCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 73199 0.7 0.264697
Target:  5'- cGAcuGCU-GCCCGcGGGCCaGGCCCGc -3'
miRNA:   3'- -CUucCGGuCGGGCaCCCGGaCCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 81802 0.7 0.264697
Target:  5'- cGAAGaGCCcggcgaAGCCCGcgGGGCagccGGCCCGc -3'
miRNA:   3'- -CUUC-CGG------UCGGGCa-CCCGga--CCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 131033 0.7 0.264697
Target:  5'- uGAAGGCCucccGCUCGUcgGGGCCggaGGCCg- -3'
miRNA:   3'- -CUUCCGGu---CGGGCA--CCCGGa--CCGGgc -5'
29610 3' -65.4 NC_006151.1 + 82689 0.7 0.264697
Target:  5'- cGAGGGCggCGGCCCccgcgaGGGCCaggaGGCCCGc -3'
miRNA:   3'- -CUUCCG--GUCGGGca----CCCGGa---CCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 2175 0.7 0.27074
Target:  5'- cGGGGCCGGCCCc-GGcGCCcgaGGCCCc -3'
miRNA:   3'- cUUCCGGUCGGGcaCC-CGGa--CCGGGc -5'
29610 3' -65.4 NC_006151.1 + 76979 0.7 0.276274
Target:  5'- aGAAGGCCAGCgCGgugaGGagcGCCgcgagggUGGCCCGc -3'
miRNA:   3'- -CUUCCGGUCGgGCa---CC---CGG-------ACCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 49653 0.7 0.276894
Target:  5'- aGGAGGUCgAGCCCuccGGGCC-GcGCCCGg -3'
miRNA:   3'- -CUUCCGG-UCGGGca-CCCGGaC-CGGGC- -5'
29610 3' -65.4 NC_006151.1 + 40149 0.7 0.276894
Target:  5'- cGAcGGCCGGCCCcgcGGCCcgcucgGGCCCa -3'
miRNA:   3'- -CUuCCGGUCGGGcacCCGGa-----CCGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.