miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29610 3' -65.4 NC_006151.1 + 2082 0.67 0.415073
Target:  5'- aGAuGGCCuccaccuugaugGGCCCGagcGGGCCgcgGGgCCGg -3'
miRNA:   3'- -CUuCCGG------------UCGGGCa--CCCGGa--CCgGGC- -5'
29610 3' -65.4 NC_006151.1 + 27572 0.67 0.415073
Target:  5'- cGggGGCCGGgUgGgUGGGCgaGGCUCc -3'
miRNA:   3'- -CuuCCGGUCgGgC-ACCCGgaCCGGGc -5'
29610 3' -65.4 NC_006151.1 + 39453 0.67 0.406816
Target:  5'- --cGGCC-GCCCaGUGcGCCgugcgcUGGCCCGg -3'
miRNA:   3'- cuuCCGGuCGGG-CACcCGG------ACCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 36332 0.67 0.398662
Target:  5'- -cGGGCCGGCUCc-GGGCCccGGCCg- -3'
miRNA:   3'- cuUCCGGUCGGGcaCCCGGa-CCGGgc -5'
29610 3' -65.4 NC_006151.1 + 22095 0.67 0.398662
Target:  5'- -uGGGCC-GCCgGUGGGCCaccGCCuCGu -3'
miRNA:   3'- cuUCCGGuCGGgCACCCGGac-CGG-GC- -5'
29610 3' -65.4 NC_006151.1 + 64866 0.67 0.390614
Target:  5'- gGAGGGCCGcuGCCCGgcgGGaGCagGGCCgCGa -3'
miRNA:   3'- -CUUCCGGU--CGGGCa--CC-CGgaCCGG-GC- -5'
29610 3' -65.4 NC_006151.1 + 101214 0.67 0.390614
Target:  5'- cGAGGGCCAGgC-GUGGaCggGGCCCGg -3'
miRNA:   3'- -CUUCCGGUCgGgCACCcGgaCCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 118438 0.67 0.382673
Target:  5'- cGGAGGUguGCgCGcggcucGGCCUGGCCgCGg -3'
miRNA:   3'- -CUUCCGguCGgGCac----CCGGACCGG-GC- -5'
29610 3' -65.4 NC_006151.1 + 98968 0.67 0.381885
Target:  5'- cGAGGCgGcgcugguGCCCGUGGGCgaGGUCa- -3'
miRNA:   3'- cUUCCGgU-------CGGGCACCCGgaCCGGgc -5'
29610 3' -65.4 NC_006151.1 + 104389 0.67 0.37484
Target:  5'- --cGGCUGGCCCGcaucgccgGcGGCgugCUGGCCCGc -3'
miRNA:   3'- cuuCCGGUCGGGCa-------C-CCG---GACCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 4203 0.67 0.37484
Target:  5'- -cAGGCgGGCCCGaggGcGGCCggGGCgCGg -3'
miRNA:   3'- cuUCCGgUCGGGCa--C-CCGGa-CCGgGC- -5'
29610 3' -65.4 NC_006151.1 + 18428 0.67 0.37484
Target:  5'- gGAGGGCC-GCCgGcGGGCgUcGCCCGc -3'
miRNA:   3'- -CUUCCGGuCGGgCaCCCGgAcCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 55037 0.67 0.37484
Target:  5'- --cGGCCGGCgCCGUGgagaagaugcucGGCgaGGaCCCGg -3'
miRNA:   3'- cuuCCGGUCG-GGCAC------------CCGgaCC-GGGC- -5'
29610 3' -65.4 NC_006151.1 + 55497 0.68 0.367116
Target:  5'- --cGGCCAGCcgCCGcGGGaCCUcGGCCaCGa -3'
miRNA:   3'- cuuCCGGUCG--GGCaCCC-GGA-CCGG-GC- -5'
29610 3' -65.4 NC_006151.1 + 111264 0.68 0.366349
Target:  5'- cGAGGCCGGgaaCCGcgcgGgcgggggguacgcGGCCUGGCCCa -3'
miRNA:   3'- cUUCCGGUCg--GGCa---C-------------CCGGACCGGGc -5'
29610 3' -65.4 NC_006151.1 + 48673 0.68 0.351255
Target:  5'- cGGGGCagGGgCCG-GGGCCUcgaagccGGCCCGa -3'
miRNA:   3'- cUUCCGg-UCgGGCaCCCGGA-------CCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 126163 0.68 0.344608
Target:  5'- --uGGCCGGCCUGgucGcGGCCuuccUGGCCUa -3'
miRNA:   3'- cuuCCGGUCGGGCa--C-CCGG----ACCGGGc -5'
29610 3' -65.4 NC_006151.1 + 134971 0.68 0.344608
Target:  5'- --cGGCCAGCCUccGGGCCUucucgggcgGGCgCGu -3'
miRNA:   3'- cuuCCGGUCGGGcaCCCGGA---------CCGgGC- -5'
29610 3' -65.4 NC_006151.1 + 58254 0.68 0.344608
Target:  5'- ---cGCCGGCCCGcGGGCCgcaGCaCCGu -3'
miRNA:   3'- cuucCGGUCGGGCaCCCGGac-CG-GGC- -5'
29610 3' -65.4 NC_006151.1 + 37459 0.68 0.344608
Target:  5'- -cAGGCCgcGGCCCGcuaccgcgccGcGGCCgGGCCCGu -3'
miRNA:   3'- cuUCCGG--UCGGGCa---------C-CCGGaCCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.