miRNA display CGI


Results 41 - 60 of 99 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29610 3' -65.4 NC_006151.1 + 87339 0.68 0.344608
Target:  5'- -cGGGCCuGCCgGgccuccaGGGCCUggcGGCCCc -3'
miRNA:   3'- cuUCCGGuCGGgCa------CCCGGA---CCGGGc -5'
29610 3' -65.4 NC_006151.1 + 31259 0.68 0.33733
Target:  5'- -cGGGCgAGCCg--GGGCCcccGGCCCGc -3'
miRNA:   3'- cuUCCGgUCGGgcaCCCGGa--CCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 39501 0.68 0.333016
Target:  5'- --cGGCCGuGCUggacucuagcuccauCGUGGGCCcGGCCUGc -3'
miRNA:   3'- cuuCCGGU-CGG---------------GCACCCGGaCCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 82130 0.68 0.330163
Target:  5'- --uGGaagCGGCCCGcGGGCg-GGCCCGg -3'
miRNA:   3'- cuuCCg--GUCGGGCaCCCGgaCCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 38126 0.69 0.316169
Target:  5'- cGGGGCCGGCCCGgccgagcgGcGGCa-GGCCgCGg -3'
miRNA:   3'- cUUCCGGUCGGGCa-------C-CCGgaCCGG-GC- -5'
29610 3' -65.4 NC_006151.1 + 38310 0.69 0.316169
Target:  5'- --cGGCCcgGGCCCGcGGaGCCcGcGCCCGg -3'
miRNA:   3'- cuuCCGG--UCGGGCaCC-CGGaC-CGGGC- -5'
29610 3' -65.4 NC_006151.1 + 22553 0.69 0.316169
Target:  5'- cGGAGGCCacguggcgguAGCCguCGUuccGGGCCcgGGCCCu -3'
miRNA:   3'- -CUUCCGG----------UCGG--GCA---CCCGGa-CCGGGc -5'
29610 3' -65.4 NC_006151.1 + 135145 0.69 0.309342
Target:  5'- -cGGGCagaccCAGCCCGgcGGGCgC-GGCCCGg -3'
miRNA:   3'- cuUCCG-----GUCGGGCa-CCCG-GaCCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 129834 0.69 0.309342
Target:  5'- cGgcGGCgUAGCCCagcgacacGGCCUGGCCCa -3'
miRNA:   3'- -CuuCCG-GUCGGGcac-----CCGGACCGGGc -5'
29610 3' -65.4 NC_006151.1 + 48392 0.69 0.302627
Target:  5'- cGGAGGUCAuCCUGUGGGCgucgGGCaCCGc -3'
miRNA:   3'- -CUUCCGGUcGGGCACCCGga--CCG-GGC- -5'
29610 3' -65.4 NC_006151.1 + 26314 0.69 0.302627
Target:  5'- gGGAGGaaagaaCAGCgCG-GGGCgaGGCCCGc -3'
miRNA:   3'- -CUUCCg-----GUCGgGCaCCCGgaCCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 24637 0.69 0.296026
Target:  5'- -uAGGCgAGCCCGcGGaGCaC-GGCCCGg -3'
miRNA:   3'- cuUCCGgUCGGGCaCC-CG-GaCCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 3933 0.69 0.289537
Target:  5'- cGggGGCaGGCCgGgcgcGGGCUccgcgGGCCCGg -3'
miRNA:   3'- -CuuCCGgUCGGgCa---CCCGGa----CCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 8219 0.69 0.289537
Target:  5'- aGAGGGCCGGguccccuuCCCGgcggggaGGGCCgGGCCgGc -3'
miRNA:   3'- -CUUCCGGUC--------GGGCa------CCCGGaCCGGgC- -5'
29610 3' -65.4 NC_006151.1 + 56189 0.69 0.289537
Target:  5'- --uGGCCGugccGCCgGUGGcgcugccgcaccGCCUGGCCCu -3'
miRNA:   3'- cuuCCGGU----CGGgCACC------------CGGACCGGGc -5'
29610 3' -65.4 NC_006151.1 + 86320 0.69 0.289537
Target:  5'- uGggGGCCGugcucGCCCGc--GCCgugGGCCCGg -3'
miRNA:   3'- -CuuCCGGU-----CGGGCaccCGGa--CCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 50329 0.69 0.28316
Target:  5'- aGAcGGCC-GCCCG-GcGCCUGGCCgCGg -3'
miRNA:   3'- -CUuCCGGuCGGGCaCcCGGACCGG-GC- -5'
29610 3' -65.4 NC_006151.1 + 37335 0.69 0.28316
Target:  5'- -cGGGCCGcugcucaccccGCUCG-GGGagcCCUGGCCCGg -3'
miRNA:   3'- cuUCCGGU-----------CGGGCaCCC---GGACCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 40149 0.7 0.276894
Target:  5'- cGAcGGCCGGCCCcgcGGCCcgcucgGGCCCa -3'
miRNA:   3'- -CUuCCGGUCGGGcacCCGGa-----CCGGGc -5'
29610 3' -65.4 NC_006151.1 + 49653 0.7 0.276894
Target:  5'- aGGAGGUCgAGCCCuccGGGCC-GcGCCCGg -3'
miRNA:   3'- -CUUCCGG-UCGGGca-CCCGGaC-CGGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.