miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29610 3' -65.4 NC_006151.1 + 101450 0.79 0.057773
Target:  5'- --uGGUCGGCgCCGUGGGCCUGGgCCu -3'
miRNA:   3'- cuuCCGGUCG-GGCACCCGGACCgGGc -5'
29610 3' -65.4 NC_006151.1 + 11040 0.77 0.084732
Target:  5'- --cGGCCGGCCgG-GGGCCcGGCCUGg -3'
miRNA:   3'- cuuCCGGUCGGgCaCCCGGaCCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 110832 0.76 0.096137
Target:  5'- -cAGGCCga-CCGUGGGCCgGGCCCa -3'
miRNA:   3'- cuUCCGGucgGGCACCCGGaCCGGGc -5'
29610 3' -65.4 NC_006151.1 + 132854 0.75 0.117445
Target:  5'- gGgcGGCCGGCCCG-GGGCC-GcGCCCc -3'
miRNA:   3'- -CuuCCGGUCGGGCaCCCGGaC-CGGGc -5'
29610 3' -65.4 NC_006151.1 + 27331 0.75 0.122509
Target:  5'- gGggGGCUgcuccccgggaccgGGgUCGUGGGCCggGGCCCGg -3'
miRNA:   3'- -CuuCCGG--------------UCgGGCACCCGGa-CCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 28233 0.74 0.139624
Target:  5'- aGggGGCCGGgCCGacGGGCCcauUGGCCgGg -3'
miRNA:   3'- -CuuCCGGUCgGGCa-CCCGG---ACCGGgC- -5'
29610 3' -65.4 NC_006151.1 + 14010 0.74 0.146635
Target:  5'- uGAGGCCccggccaaugGGCCCGUcGGCCcGGCCCc -3'
miRNA:   3'- cUUCCGG----------UCGGGCAcCCGGaCCGGGc -5'
29610 3' -65.4 NC_006151.1 + 40076 0.73 0.161626
Target:  5'- cGggGGCCucgGGCgCCG-GGGCC-GGCCCc -3'
miRNA:   3'- -CuuCCGG---UCG-GGCaCCCGGaCCGGGc -5'
29610 3' -65.4 NC_006151.1 + 117791 0.73 0.161626
Target:  5'- cGggGcGCCAcGCCCGgcgGGGCggGGCCCc -3'
miRNA:   3'- -CuuC-CGGU-CGGGCa--CCCGgaCCGGGc -5'
29610 3' -65.4 NC_006151.1 + 10576 0.73 0.169628
Target:  5'- --cGGCCGGCUCG-GcGGCCcGGCCCu -3'
miRNA:   3'- cuuCCGGUCGGGCaC-CCGGaCCGGGc -5'
29610 3' -65.4 NC_006151.1 + 125225 0.72 0.185813
Target:  5'- --cGGCC-GCCCGUcGGGCCcggcgcucccccGGCCCGg -3'
miRNA:   3'- cuuCCGGuCGGGCA-CCCGGa-----------CCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 130702 0.72 0.191201
Target:  5'- cGggGGCCcgacggggcGGCCCGgGGGCCcgcgcGGCCgCGg -3'
miRNA:   3'- -CuuCCGG---------UCGGGCaCCCGGa----CCGG-GC- -5'
29610 3' -65.4 NC_006151.1 + 49014 0.72 0.191201
Target:  5'- --cGGCCAGgaCCCGUaccacgggccGGGCCaGGCCCa -3'
miRNA:   3'- cuuCCGGUC--GGGCA----------CCCGGaCCGGGc -5'
29610 3' -65.4 NC_006151.1 + 5070 0.72 0.205272
Target:  5'- aGGAGGCCgagGGCCgCG-GGGCCgcggcgGGCgCCGg -3'
miRNA:   3'- -CUUCCGG---UCGG-GCaCCCGGa-----CCG-GGC- -5'
29610 3' -65.4 NC_006151.1 + 5011 0.71 0.215144
Target:  5'- cGggGGCCgggcgGGCuCCG-GGGCCggGGCCgGg -3'
miRNA:   3'- -CuuCCGG-----UCG-GGCaCCCGGa-CCGGgC- -5'
29610 3' -65.4 NC_006151.1 + 21540 0.71 0.215144
Target:  5'- cGGGGCCgGGgCCG-GGGCCUGGgCCu -3'
miRNA:   3'- cUUCCGG-UCgGGCaCCCGGACCgGGc -5'
29610 3' -65.4 NC_006151.1 + 116579 0.71 0.220231
Target:  5'- cGAGGGCCAGCCCGUagacGGUCgUGaGCuuGg -3'
miRNA:   3'- -CUUCCGGUCGGGCAc---CCGG-AC-CGggC- -5'
29610 3' -65.4 NC_006151.1 + 5937 0.71 0.220231
Target:  5'- -cGGaGCCGGCCCG-GGaCCggGGCCCGa -3'
miRNA:   3'- cuUC-CGGUCGGGCaCCcGGa-CCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 115688 0.71 0.230179
Target:  5'- gGGAGGCaggggagCAGCCCGUuGGCCacGCCCGu -3'
miRNA:   3'- -CUUCCG-------GUCGGGCAcCCGGacCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 3402 0.71 0.230713
Target:  5'- gGAGGGCCgcGGCgUGUGGGUCUcgccGGCCgGg -3'
miRNA:   3'- -CUUCCGG--UCGgGCACCCGGA----CCGGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.