miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29610 3' -65.4 NC_006151.1 + 2082 0.67 0.415073
Target:  5'- aGAuGGCCuccaccuugaugGGCCCGagcGGGCCgcgGGgCCGg -3'
miRNA:   3'- -CUuCCGG------------UCGGGCa--CCCGGa--CCgGGC- -5'
29610 3' -65.4 NC_006151.1 + 2175 0.7 0.27074
Target:  5'- cGGGGCCGGCCCc-GGcGCCcgaGGCCCc -3'
miRNA:   3'- cUUCCGGUCGGGcaCC-CGGa--CCGGGc -5'
29610 3' -65.4 NC_006151.1 + 3402 0.71 0.230713
Target:  5'- gGAGGGCCgcGGCgUGUGGGUCUcgccGGCCgGg -3'
miRNA:   3'- -CUUCCGG--UCGgGCACCCGGA----CCGGgC- -5'
29610 3' -65.4 NC_006151.1 + 3933 0.69 0.289537
Target:  5'- cGggGGCaGGCCgGgcgcGGGCUccgcgGGCCCGg -3'
miRNA:   3'- -CuuCCGgUCGGgCa---CCCGGa----CCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 4203 0.67 0.37484
Target:  5'- -cAGGCgGGCCCGaggGcGGCCggGGCgCGg -3'
miRNA:   3'- cuUCCGgUCGGGCa--C-CCGGa-CCGgGC- -5'
29610 3' -65.4 NC_006151.1 + 4408 0.66 0.457849
Target:  5'- --cGGCgCGGCCCGgguaGGCCaugucggcguaGGCCCGg -3'
miRNA:   3'- cuuCCG-GUCGGGCac--CCGGa----------CCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 4928 0.66 0.449103
Target:  5'- cGGGGUgagcagCGGCCCGUcGGUCggcgggGGCCCGu -3'
miRNA:   3'- cUUCCG------GUCGGGCAcCCGGa-----CCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 5011 0.71 0.215144
Target:  5'- cGggGGCCgggcgGGCuCCG-GGGCCggGGCCgGg -3'
miRNA:   3'- -CuuCCGG-----UCG-GGCaCCCGGa-CCGGgC- -5'
29610 3' -65.4 NC_006151.1 + 5070 0.72 0.205272
Target:  5'- aGGAGGCCgagGGCCgCG-GGGCCgcggcgGGCgCCGg -3'
miRNA:   3'- -CUUCCGG---UCGG-GCaCCCGGa-----CCG-GGC- -5'
29610 3' -65.4 NC_006151.1 + 5229 0.66 0.466685
Target:  5'- aGGAGGCCgAGCgCCGcgcgGcGGCggcgggGGCCCGg -3'
miRNA:   3'- -CUUCCGG-UCG-GGCa---C-CCGga----CCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 5412 0.66 0.437872
Target:  5'- cGAGGCCgAGUCCGUccucguccuucucgGGGCCgcgGGCgaCGg -3'
miRNA:   3'- cUUCCGG-UCGGGCA--------------CCCGGa--CCGg-GC- -5'
29610 3' -65.4 NC_006151.1 + 5847 0.7 0.255255
Target:  5'- gGGAGGCUGcggagggggacgagcGCCCG-GGGCCgccgggGGCCCc -3'
miRNA:   3'- -CUUCCGGU---------------CGGGCaCCCGGa-----CCGGGc -5'
29610 3' -65.4 NC_006151.1 + 5937 0.71 0.220231
Target:  5'- -cGGaGCCGGCCCG-GGaCCggGGCCCGa -3'
miRNA:   3'- cuUC-CGGUCGGGCaCCcGGa-CCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 8219 0.69 0.289537
Target:  5'- aGAGGGCCGGguccccuuCCCGgcggggaGGGCCgGGCCgGc -3'
miRNA:   3'- -CUUCCGGUC--------GGGCa------CCCGGaCCGGgC- -5'
29610 3' -65.4 NC_006151.1 + 8591 0.67 0.415073
Target:  5'- uGAGGGCCGGUgCGaguauggGGGCC-GGUgCGg -3'
miRNA:   3'- -CUUCCGGUCGgGCa------CCCGGaCCGgGC- -5'
29610 3' -65.4 NC_006151.1 + 10576 0.73 0.169628
Target:  5'- --cGGCCGGCUCG-GcGGCCcGGCCCu -3'
miRNA:   3'- cuuCCGGUCGGGCaC-CCGGaCCGGGc -5'
29610 3' -65.4 NC_006151.1 + 10900 0.7 0.241613
Target:  5'- gGggGuGCCGGCgCGgaccgGGGUCgGGCCCa -3'
miRNA:   3'- -CuuC-CGGUCGgGCa----CCCGGaCCGGGc -5'
29610 3' -65.4 NC_006151.1 + 11040 0.77 0.084732
Target:  5'- --cGGCCGGCCgG-GGGCCcGGCCUGg -3'
miRNA:   3'- cuuCCGGUCGGgCaCCCGGaCCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 14010 0.74 0.146635
Target:  5'- uGAGGCCccggccaaugGGCCCGUcGGCCcGGCCCc -3'
miRNA:   3'- cUUCCGG----------UCGGGCAcCCGGaCCGGGc -5'
29610 3' -65.4 NC_006151.1 + 18428 0.67 0.37484
Target:  5'- gGAGGGCC-GCCgGcGGGCgUcGCCCGc -3'
miRNA:   3'- -CUUCCGGuCGGgCaCCCGgAcCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.