miRNA display CGI


Results 1 - 20 of 99 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29610 3' -65.4 NC_006151.1 + 142710 0.67 0.415073
Target:  5'- uGGGGCCAGCUCucccccGGGCCcccacaacucucUGGCCgGg -3'
miRNA:   3'- cUUCCGGUCGGGca----CCCGG------------ACCGGgC- -5'
29610 3' -65.4 NC_006151.1 + 135145 0.69 0.309342
Target:  5'- -cGGGCagaccCAGCCCGgcGGGCgC-GGCCCGg -3'
miRNA:   3'- cuUCCG-----GUCGGGCa-CCCG-GaCCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 134971 0.68 0.344608
Target:  5'- --cGGCCAGCCUccGGGCCUucucgggcgGGCgCGu -3'
miRNA:   3'- cuuCCGGUCGGGcaCCCGGA---------CCGgGC- -5'
29610 3' -65.4 NC_006151.1 + 134782 0.7 0.241613
Target:  5'- --cGGCUccacgGGCCUGUGaGGCCgcggcGGCCCGc -3'
miRNA:   3'- cuuCCGG-----UCGGGCAC-CCGGa----CCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 132854 0.75 0.117445
Target:  5'- gGgcGGCCGGCCCG-GGGCC-GcGCCCc -3'
miRNA:   3'- -CuuCCGGUCGGGCaCCCGGaC-CGGGc -5'
29610 3' -65.4 NC_006151.1 + 131033 0.7 0.264697
Target:  5'- uGAAGGCCucccGCUCGUcgGGGCCggaGGCCg- -3'
miRNA:   3'- -CUUCCGGu---CGGGCA--CCCGGa--CCGGgc -5'
29610 3' -65.4 NC_006151.1 + 130702 0.72 0.191201
Target:  5'- cGggGGCCcgacggggcGGCCCGgGGGCCcgcgcGGCCgCGg -3'
miRNA:   3'- -CuuCCGG---------UCGGGCaCCCGGa----CCGG-GC- -5'
29610 3' -65.4 NC_006151.1 + 129834 0.69 0.309342
Target:  5'- cGgcGGCgUAGCCCagcgacacGGCCUGGCCCa -3'
miRNA:   3'- -CuuCCG-GUCGGGcac-----CCGGACCGGGc -5'
29610 3' -65.4 NC_006151.1 + 129777 0.66 0.449103
Target:  5'- cGAGGGCgucgcucccGCCggCGUGGGCCcgcaugaGGCCCGu -3'
miRNA:   3'- -CUUCCGgu-------CGG--GCACCCGGa------CCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 126403 0.7 0.252938
Target:  5'- --uGGCCAGCCgCGUcgGGGCgaUGGCCaCGc -3'
miRNA:   3'- cuuCCGGUCGG-GCA--CCCGg-ACCGG-GC- -5'
29610 3' -65.4 NC_006151.1 + 126163 0.68 0.344608
Target:  5'- --uGGCCGGCCUGgucGcGGCCuuccUGGCCUa -3'
miRNA:   3'- cuuCCGGUCGGGCa--C-CCGG----ACCGGGc -5'
29610 3' -65.4 NC_006151.1 + 125225 0.72 0.185813
Target:  5'- --cGGCC-GCCCGUcGGGCCcggcgcucccccGGCCCGg -3'
miRNA:   3'- cuuCCGGuCGGGCA-CCCGGa-----------CCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 125196 0.7 0.252938
Target:  5'- ---cGCCGGCgUCGUGGGCCccgcGGCCCc -3'
miRNA:   3'- cuucCGGUCG-GGCACCCGGa---CCGGGc -5'
29610 3' -65.4 NC_006151.1 + 124148 0.66 0.475609
Target:  5'- --cGGCUggAGCCCGagcaGGCCUGcCCCGa -3'
miRNA:   3'- cuuCCGG--UCGGGCac--CCGGACcGGGC- -5'
29610 3' -65.4 NC_006151.1 + 123764 0.66 0.457849
Target:  5'- -uGGcGCgGGCCCcggGGGCaucGGCCCGg -3'
miRNA:   3'- cuUC-CGgUCGGGca-CCCGga-CCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 119124 0.66 0.44045
Target:  5'- --cGGCCGGCCuCGUggGGGCgCUGGUg-- -3'
miRNA:   3'- cuuCCGGUCGG-GCA--CCCG-GACCGggc -5'
29610 3' -65.4 NC_006151.1 + 118438 0.67 0.382673
Target:  5'- cGGAGGUguGCgCGcggcucGGCCUGGCCgCGg -3'
miRNA:   3'- -CUUCCGguCGgGCac----CCGGACCGG-GC- -5'
29610 3' -65.4 NC_006151.1 + 117791 0.73 0.161626
Target:  5'- cGggGcGCCAcGCCCGgcgGGGCggGGCCCc -3'
miRNA:   3'- -CuuC-CGGU-CGGGCa--CCCGgaCCGGGc -5'
29610 3' -65.4 NC_006151.1 + 116579 0.71 0.220231
Target:  5'- cGAGGGCCAGCCCGUagacGGUCgUGaGCuuGg -3'
miRNA:   3'- -CUUCCGGUCGGGCAc---CCGG-AC-CGggC- -5'
29610 3' -65.4 NC_006151.1 + 115688 0.71 0.230179
Target:  5'- gGGAGGCaggggagCAGCCCGUuGGCCacGCCCGu -3'
miRNA:   3'- -CUUCCG-------GUCGGGCAcCCGGacCGGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.