miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29610 5' -57.3 NC_006151.1 + 4784 0.66 0.836311
Target:  5'- cACGGG-CCcGGCCGcgGcgcgguagcgGGCCGCg -3'
miRNA:   3'- aUGCCCaGGaCCGGCuaCua--------CUGGUG- -5'
29610 5' -57.3 NC_006151.1 + 82498 0.66 0.836311
Target:  5'- gACGaGGUaCC-GGCCGAgcaGGUGcCCGCg -3'
miRNA:   3'- aUGC-CCA-GGaCCGGCUa--CUACuGGUG- -5'
29610 5' -57.3 NC_006151.1 + 81727 0.66 0.827949
Target:  5'- -cCGGGUCCUcGCCGAaGGUccaGGCgGCg -3'
miRNA:   3'- auGCCCAGGAcCGGCUaCUA---CUGgUG- -5'
29610 5' -57.3 NC_006151.1 + 102286 0.66 0.827949
Target:  5'- aGCGcGG-CCcGGCCGggGAcuuugUGGCCGCc -3'
miRNA:   3'- aUGC-CCaGGaCCGGCuaCU-----ACUGGUG- -5'
29610 5' -57.3 NC_006151.1 + 84890 0.66 0.819408
Target:  5'- cGCuGGacuUCCUGGCC-AUGGUGuacGCCGCg -3'
miRNA:   3'- aUGcCC---AGGACCGGcUACUAC---UGGUG- -5'
29610 5' -57.3 NC_006151.1 + 20180 0.66 0.819408
Target:  5'- -cCGGGUCgC-GGCCGGUaGAUGcgauuCCGCg -3'
miRNA:   3'- auGCCCAG-GaCCGGCUA-CUACu----GGUG- -5'
29610 5' -57.3 NC_006151.1 + 29404 0.66 0.810695
Target:  5'- gGCGGGaCCgcgcggagaaGGCuCGGUG-UGGCCGCg -3'
miRNA:   3'- aUGCCCaGGa---------CCG-GCUACuACUGGUG- -5'
29610 5' -57.3 NC_006151.1 + 22581 0.67 0.80182
Target:  5'- -cCGGGcCCgGGCCc-UGAUGAUCGCc -3'
miRNA:   3'- auGCCCaGGaCCGGcuACUACUGGUG- -5'
29610 5' -57.3 NC_006151.1 + 126387 0.67 0.800923
Target:  5'- aGCGGGcCCgcgcugcUGGCCagccgcgucggGgcGAUGGCCACg -3'
miRNA:   3'- aUGCCCaGG-------ACCGG-----------CuaCUACUGGUG- -5'
29610 5' -57.3 NC_006151.1 + 50277 0.67 0.79279
Target:  5'- cGCGcGUCCgUGGCCacGGUcGAUGACUACc -3'
miRNA:   3'- aUGCcCAGG-ACCGG--CUA-CUACUGGUG- -5'
29610 5' -57.3 NC_006151.1 + 133408 0.67 0.783614
Target:  5'- aGCGGGcggUCUUGGCCGcgGAcgcgggggucuUGGCgGCc -3'
miRNA:   3'- aUGCCC---AGGACCGGCuaCU-----------ACUGgUG- -5'
29610 5' -57.3 NC_006151.1 + 89587 0.67 0.783614
Target:  5'- cAUGGGcucgCCggcGGCCGugaggacGAUGGCCGCg -3'
miRNA:   3'- aUGCCCa---GGa--CCGGCua-----CUACUGGUG- -5'
29610 5' -57.3 NC_006151.1 + 18772 0.67 0.780834
Target:  5'- -cCGGGgCCcgGGCCGGggccgucagcuccuUGAUGACCGu -3'
miRNA:   3'- auGCCCaGGa-CCGGCU--------------ACUACUGGUg -5'
29610 5' -57.3 NC_006151.1 + 134788 0.67 0.774301
Target:  5'- cACGGG-CCUgugaGGCCGcgGcgGcCCGCg -3'
miRNA:   3'- aUGCCCaGGA----CCGGCuaCuaCuGGUG- -5'
29610 5' -57.3 NC_006151.1 + 89526 0.67 0.773362
Target:  5'- gACGuGGUCCgccUcgagcagcgccgaGGCCGGUGGaGGCCGCg -3'
miRNA:   3'- aUGC-CCAGG---A-------------CCGGCUACUaCUGGUG- -5'
29610 5' -57.3 NC_006151.1 + 23970 0.67 0.76486
Target:  5'- gAgGGGccUCuCUGGCCacgacGGUGcgGACCACg -3'
miRNA:   3'- aUgCCC--AG-GACCGG-----CUACuaCUGGUG- -5'
29610 5' -57.3 NC_006151.1 + 3121 0.67 0.76486
Target:  5'- cGCGGGUCCcaGGCCGGgcGcgGGgCGCc -3'
miRNA:   3'- aUGCCCAGGa-CCGGCUa-CuaCUgGUG- -5'
29610 5' -57.3 NC_006151.1 + 131106 0.67 0.76486
Target:  5'- gGCGGGgggCCcGGCCGcgGcgcgggaGGCCGCg -3'
miRNA:   3'- aUGCCCa--GGaCCGGCuaCua-----CUGGUG- -5'
29610 5' -57.3 NC_006151.1 + 56137 0.67 0.754338
Target:  5'- cGCGGGUucgCCUucgcgguggucacGGCCGccGAgGACCGCg -3'
miRNA:   3'- aUGCCCA---GGA-------------CCGGCuaCUaCUGGUG- -5'
29610 5' -57.3 NC_006151.1 + 101890 0.68 0.735862
Target:  5'- cGCGGGUCCagaagcGGCCGAgcAUGcCCAa -3'
miRNA:   3'- aUGCCCAGGa-----CCGGCUacUACuGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.