miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29610 5' -57.3 NC_006151.1 + 3121 0.67 0.76486
Target:  5'- cGCGGGUCCcaGGCCGGgcGcgGGgCGCc -3'
miRNA:   3'- aUGCCCAGGa-CCGGCUa-CuaCUgGUG- -5'
29610 5' -57.3 NC_006151.1 + 4533 0.7 0.614162
Target:  5'- aGCGGGUCCUGGgCGGccAUGGCguCc -3'
miRNA:   3'- aUGCCCAGGACCgGCUacUACUGguG- -5'
29610 5' -57.3 NC_006151.1 + 4784 0.66 0.836311
Target:  5'- cACGGG-CCcGGCCGcgGcgcgguagcgGGCCGCg -3'
miRNA:   3'- aUGCCCaGGaCCGGCuaCua--------CUGGUG- -5'
29610 5' -57.3 NC_006151.1 + 5020 0.73 0.420106
Target:  5'- gGCGGGcUCCggggccggGGCCGggGA-GGCCGCg -3'
miRNA:   3'- aUGCCC-AGGa-------CCGGCuaCUaCUGGUG- -5'
29610 5' -57.3 NC_006151.1 + 8652 0.7 0.611086
Target:  5'- gUGCGGGUguuaCUGGCgauaccgguaccgaCGGUGGUGGCCGg -3'
miRNA:   3'- -AUGCCCAg---GACCG--------------GCUACUACUGGUg -5'
29610 5' -57.3 NC_006151.1 + 18772 0.67 0.780834
Target:  5'- -cCGGGgCCcgGGCCGGggccgucagcuccuUGAUGACCGu -3'
miRNA:   3'- auGCCCaGGa-CCGGCU--------------ACUACUGGUg -5'
29610 5' -57.3 NC_006151.1 + 20180 0.66 0.819408
Target:  5'- -cCGGGUCgC-GGCCGGUaGAUGcgauuCCGCg -3'
miRNA:   3'- auGCCCAG-GaCCGGCUA-CUACu----GGUG- -5'
29610 5' -57.3 NC_006151.1 + 22581 0.67 0.80182
Target:  5'- -cCGGGcCCgGGCCc-UGAUGAUCGCc -3'
miRNA:   3'- auGCCCaGGaCCGGcuACUACUGGUG- -5'
29610 5' -57.3 NC_006151.1 + 22948 0.7 0.583485
Target:  5'- cGCuGGGUCCUcGGUcguccgcaCGGUGGUGACCGu -3'
miRNA:   3'- aUG-CCCAGGA-CCG--------GCUACUACUGGUg -5'
29610 5' -57.3 NC_006151.1 + 23970 0.67 0.76486
Target:  5'- gAgGGGccUCuCUGGCCacgacGGUGcgGACCACg -3'
miRNA:   3'- aUgCCC--AG-GACCGG-----CUACuaCUGGUG- -5'
29610 5' -57.3 NC_006151.1 + 28946 0.68 0.726002
Target:  5'- -gUGGGcCCgagGGCCGGaucUGAUugGGCCACg -3'
miRNA:   3'- auGCCCaGGa--CCGGCU---ACUA--CUGGUG- -5'
29610 5' -57.3 NC_006151.1 + 29404 0.66 0.810695
Target:  5'- gGCGGGaCCgcgcggagaaGGCuCGGUG-UGGCCGCg -3'
miRNA:   3'- aUGCCCaGGa---------CCG-GCUACuACUGGUG- -5'
29610 5' -57.3 NC_006151.1 + 40507 0.68 0.716061
Target:  5'- cGCGGaUCCcccGGCCGGaGGUGGCUGCg -3'
miRNA:   3'- aUGCCcAGGa--CCGGCUaCUACUGGUG- -5'
29610 5' -57.3 NC_006151.1 + 41108 0.69 0.675666
Target:  5'- gGCGGGUCCUGGUgggaGGUaGAUGGuCC-Cg -3'
miRNA:   3'- aUGCCCAGGACCGg---CUA-CUACU-GGuG- -5'
29610 5' -57.3 NC_006151.1 + 49947 0.69 0.634694
Target:  5'- -cCGGGaCCUGGCCGcgGcccUGGCCGg -3'
miRNA:   3'- auGCCCaGGACCGGCuaCu--ACUGGUg -5'
29610 5' -57.3 NC_006151.1 + 50277 0.67 0.79279
Target:  5'- cGCGcGUCCgUGGCCacGGUcGAUGACUACc -3'
miRNA:   3'- aUGCcCAGG-ACCGG--CUA-CUACUGGUG- -5'
29610 5' -57.3 NC_006151.1 + 56137 0.67 0.754338
Target:  5'- cGCGGGUucgCCUucgcgguggucacGGCCGccGAgGACCGCg -3'
miRNA:   3'- aUGCCCA---GGA-------------CCGGCuaCUaCUGGUG- -5'
29610 5' -57.3 NC_006151.1 + 58878 0.68 0.706048
Target:  5'- -cCGGGUCCguccaGGCCGuguaGAUcccGGCCGCg -3'
miRNA:   3'- auGCCCAGGa----CCGGCua--CUA---CUGGUG- -5'
29610 5' -57.3 NC_006151.1 + 70141 0.69 0.675666
Target:  5'- aGgGGGUCCgGGaCGAUGAcGugCACg -3'
miRNA:   3'- aUgCCCAGGaCCgGCUACUaCugGUG- -5'
29610 5' -57.3 NC_006151.1 + 74576 0.69 0.633667
Target:  5'- aGCGGGUCCccgGgcagcgugaacucGCCGAUGAggcGCCGCa -3'
miRNA:   3'- aUGCCCAGGa--C-------------CGGCUACUac-UGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.