Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29610 | 5' | -57.3 | NC_006151.1 | + | 134788 | 0.67 | 0.774301 |
Target: 5'- cACGGG-CCUgugaGGCCGcgGcgGcCCGCg -3' miRNA: 3'- aUGCCCaGGA----CCGGCuaCuaCuGGUG- -5' |
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29610 | 5' | -57.3 | NC_006151.1 | + | 133408 | 0.67 | 0.783614 |
Target: 5'- aGCGGGcggUCUUGGCCGcgGAcgcgggggucuUGGCgGCc -3' miRNA: 3'- aUGCCC---AGGACCGGCuaCU-----------ACUGgUG- -5' |
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29610 | 5' | -57.3 | NC_006151.1 | + | 131106 | 0.67 | 0.76486 |
Target: 5'- gGCGGGgggCCcGGCCGcgGcgcgggaGGCCGCg -3' miRNA: 3'- aUGCCCa--GGaCCGGCuaCua-----CUGGUG- -5' |
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29610 | 5' | -57.3 | NC_006151.1 | + | 130122 | 0.68 | 0.716061 |
Target: 5'- -cCGGGUUCUGGCCGug---GGCgCGCg -3' miRNA: 3'- auGCCCAGGACCGGCuacuaCUG-GUG- -5' |
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29610 | 5' | -57.3 | NC_006151.1 | + | 126387 | 0.67 | 0.800923 |
Target: 5'- aGCGGGcCCgcgcugcUGGCCagccgcgucggGgcGAUGGCCACg -3' miRNA: 3'- aUGCCCaGG-------ACCGG-----------CuaCUACUGGUG- -5' |
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29610 | 5' | -57.3 | NC_006151.1 | + | 121122 | 0.7 | 0.587561 |
Target: 5'- --gGGGagcacgucaagaccaUCCUGGCCGAcgGcgGGCCGCu -3' miRNA: 3'- augCCC---------------AGGACCGGCUa-CuaCUGGUG- -5' |
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29610 | 5' | -57.3 | NC_006151.1 | + | 114223 | 0.69 | 0.64496 |
Target: 5'- cGCGuGuUCCUGGCCuc-GGUGGCCGCg -3' miRNA: 3'- aUGC-CcAGGACCGGcuaCUACUGGUG- -5' |
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29610 | 5' | -57.3 | NC_006151.1 | + | 108331 | 0.68 | 0.695971 |
Target: 5'- -cCGGGcCCgccccaucGGCCaagaaauccGAUGGUGACCGCa -3' miRNA: 3'- auGCCCaGGa-------CCGG---------CUACUACUGGUG- -5' |
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29610 | 5' | -57.3 | NC_006151.1 | + | 102286 | 0.66 | 0.827949 |
Target: 5'- aGCGcGG-CCcGGCCGggGAcuuugUGGCCGCc -3' miRNA: 3'- aUGC-CCaGGaCCGGCuaCU-----ACUGGUG- -5' |
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29610 | 5' | -57.3 | NC_006151.1 | + | 101890 | 0.68 | 0.735862 |
Target: 5'- cGCGGGUCCagaagcGGCCGAgcAUGcCCAa -3' miRNA: 3'- aUGCCCAGGa-----CCGGCUacUACuGGUg -5' |
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29610 | 5' | -57.3 | NC_006151.1 | + | 100224 | 0.68 | 0.726002 |
Target: 5'- cGCGGGcgCCgUGGCCGAgcgcgUGGUGGCg-- -3' miRNA: 3'- aUGCCCa-GG-ACCGGCU-----ACUACUGgug -5' |
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29610 | 5' | -57.3 | NC_006151.1 | + | 89587 | 0.67 | 0.783614 |
Target: 5'- cAUGGGcucgCCggcGGCCGugaggacGAUGGCCGCg -3' miRNA: 3'- aUGCCCa---GGa--CCGGCua-----CUACUGGUG- -5' |
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29610 | 5' | -57.3 | NC_006151.1 | + | 89526 | 0.67 | 0.773362 |
Target: 5'- gACGuGGUCCgccUcgagcagcgccgaGGCCGGUGGaGGCCGCg -3' miRNA: 3'- aUGC-CCAGG---A-------------CCGGCUACUaCUGGUG- -5' |
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29610 | 5' | -57.3 | NC_006151.1 | + | 84890 | 0.66 | 0.819408 |
Target: 5'- cGCuGGacuUCCUGGCC-AUGGUGuacGCCGCg -3' miRNA: 3'- aUGcCC---AGGACCGGcUACUAC---UGGUG- -5' |
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29610 | 5' | -57.3 | NC_006151.1 | + | 82498 | 0.66 | 0.836311 |
Target: 5'- gACGaGGUaCC-GGCCGAgcaGGUGcCCGCg -3' miRNA: 3'- aUGC-CCA-GGaCCGGCUa--CUACuGGUG- -5' |
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29610 | 5' | -57.3 | NC_006151.1 | + | 81727 | 0.66 | 0.827949 |
Target: 5'- -cCGGGUCCUcGCCGAaGGUccaGGCgGCg -3' miRNA: 3'- auGCCCAGGAcCGGCUaCUA---CUGgUG- -5' |
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29610 | 5' | -57.3 | NC_006151.1 | + | 74576 | 0.69 | 0.633667 |
Target: 5'- aGCGGGUCCccgGgcagcgugaacucGCCGAUGAggcGCCGCa -3' miRNA: 3'- aUGCCCAGGa--C-------------CGGCUACUac-UGGUG- -5' |
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29610 | 5' | -57.3 | NC_006151.1 | + | 70141 | 0.69 | 0.675666 |
Target: 5'- aGgGGGUCCgGGaCGAUGAcGugCACg -3' miRNA: 3'- aUgCCCAGGaCCgGCUACUaCugGUG- -5' |
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29610 | 5' | -57.3 | NC_006151.1 | + | 58878 | 0.68 | 0.706048 |
Target: 5'- -cCGGGUCCguccaGGCCGuguaGAUcccGGCCGCg -3' miRNA: 3'- auGCCCAGGa----CCGGCua--CUA---CUGGUG- -5' |
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29610 | 5' | -57.3 | NC_006151.1 | + | 56137 | 0.67 | 0.754338 |
Target: 5'- cGCGGGUucgCCUucgcgguggucacGGCCGccGAgGACCGCg -3' miRNA: 3'- aUGCCCA---GGA-------------CCGGCuaCUaCUGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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