miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29611 5' -57 NC_006151.1 + 103805 0.82 0.14218
Target:  5'- aGGCCGCGCUgucggcggcCGUGGCGGCGGcCGUGg -3'
miRNA:   3'- -CUGGUGCGA---------GCACUGCCGCCaGUACa -5'
29611 5' -57 NC_006151.1 + 99975 0.75 0.355562
Target:  5'- cGCCGCGCUCGUGGCGGCGcuggCGc-- -3'
miRNA:   3'- cUGGUGCGAGCACUGCCGCca--GUaca -5'
29611 5' -57 NC_006151.1 + 52449 0.72 0.534475
Target:  5'- cGCCGcCGC-CGUGACGGCGGcCAg-- -3'
miRNA:   3'- cUGGU-GCGaGCACUGCCGCCaGUaca -5'
29611 5' -57 NC_006151.1 + 17330 0.7 0.645461
Target:  5'- cGCCGCgucaGCUCGUGcgucuCGGUGGUgAUGUa -3'
miRNA:   3'- cUGGUG----CGAGCACu----GCCGCCAgUACA- -5'
29611 5' -57 NC_006151.1 + 96208 0.7 0.655638
Target:  5'- cGCCGCGUcgcCGUGGCGGCGGcCGc-- -3'
miRNA:   3'- cUGGUGCGa--GCACUGCCGCCaGUaca -5'
29611 5' -57 NC_006151.1 + 114494 0.7 0.675926
Target:  5'- aGACCAUGUUCGUGuuGGUGGUgCGa-- -3'
miRNA:   3'- -CUGGUGCGAGCACugCCGCCA-GUaca -5'
29611 5' -57 NC_006151.1 + 60751 0.7 0.675926
Target:  5'- aGCgGCgGCUCGcGAaGGCGGUCGUGg -3'
miRNA:   3'- cUGgUG-CGAGCaCUgCCGCCAGUACa -5'
29611 5' -57 NC_006151.1 + 123897 0.69 0.686022
Target:  5'- cGGCCcCGC-CGUGcggcGCGGCGGcCGUGa -3'
miRNA:   3'- -CUGGuGCGaGCAC----UGCCGCCaGUACa -5'
29611 5' -57 NC_006151.1 + 17639 0.69 0.686022
Target:  5'- cGAgCGCGUUCGcGACGGCGGa-GUGg -3'
miRNA:   3'- -CUgGUGCGAGCaCUGCCGCCagUACa -5'
29611 5' -57 NC_006151.1 + 40534 0.68 0.735658
Target:  5'- cGGCgGCgGCggagGUGGCGGCGGUgGUGg -3'
miRNA:   3'- -CUGgUG-CGag--CACUGCCGCCAgUACa -5'
29611 5' -57 NC_006151.1 + 106788 0.68 0.735658
Target:  5'- gGACCugGC-CGcGGCGGCGGUg---- -3'
miRNA:   3'- -CUGGugCGaGCaCUGCCGCCAguaca -5'
29611 5' -57 NC_006151.1 + 23001 0.68 0.735658
Target:  5'- cGGCCGCGCggGUGggggcGCGGgGGUgGUGg -3'
miRNA:   3'- -CUGGUGCGagCAC-----UGCCgCCAgUACa -5'
29611 5' -57 NC_006151.1 + 84971 0.68 0.745353
Target:  5'- aGGCCACGCUCGUcGCGGagcgcccgcaGGUCu--- -3'
miRNA:   3'- -CUGGUGCGAGCAcUGCCg---------CCAGuaca -5'
29611 5' -57 NC_006151.1 + 77987 0.68 0.745353
Target:  5'- cGAgCGCGCgcugcgCGcGACGGUGGUCAg-- -3'
miRNA:   3'- -CUgGUGCGa-----GCaCUGCCGCCAGUaca -5'
29611 5' -57 NC_006151.1 + 84217 0.68 0.754951
Target:  5'- aGAUCACGCUCGUGccccuGCuGGUGuUCGUGg -3'
miRNA:   3'- -CUGGUGCGAGCAC-----UG-CCGCcAGUACa -5'
29611 5' -57 NC_006151.1 + 66773 0.68 0.754951
Target:  5'- cGGCCGCcCUCGgGACGGCGG-CGg-- -3'
miRNA:   3'- -CUGGUGcGAGCaCUGCCGCCaGUaca -5'
29611 5' -57 NC_006151.1 + 135242 0.68 0.783063
Target:  5'- cACCACGUUgcucuCGGCGGUCAUGc -3'
miRNA:   3'- cUGGUGCGAgcacuGCCGCCAGUACa -5'
29611 5' -57 NC_006151.1 + 122672 0.68 0.783063
Target:  5'- cGCCGCGCcgagGUGcgcGCGGCGGcCGUGg -3'
miRNA:   3'- cUGGUGCGag--CAC---UGCCGCCaGUACa -5'
29611 5' -57 NC_006151.1 + 62042 0.67 0.792177
Target:  5'- cGCUGCGCcgCGUGGCGGUGcacgcgcgcgccGUCGUGa -3'
miRNA:   3'- cUGGUGCGa-GCACUGCCGC------------CAGUACa -5'
29611 5' -57 NC_006151.1 + 94318 0.67 0.801148
Target:  5'- uGGCCACGCUCaGcGAgcggaGGUGGUcCAUGUc -3'
miRNA:   3'- -CUGGUGCGAG-CaCUg----CCGCCA-GUACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.