Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29611 | 5' | -57 | NC_006151.1 | + | 103805 | 0.82 | 0.14218 |
Target: 5'- aGGCCGCGCUgucggcggcCGUGGCGGCGGcCGUGg -3' miRNA: 3'- -CUGGUGCGA---------GCACUGCCGCCaGUACa -5' |
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29611 | 5' | -57 | NC_006151.1 | + | 122021 | 0.67 | 0.818626 |
Target: 5'- -gUCGCGCUCGacacGuACGGCGGgcgCGUGg -3' miRNA: 3'- cuGGUGCGAGCa---C-UGCCGCCa--GUACa -5' |
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29611 | 5' | -57 | NC_006151.1 | + | 102634 | 0.67 | 0.809967 |
Target: 5'- uGAgCGCGCUCGaGGCGGCGcUCGa-- -3' miRNA: 3'- -CUgGUGCGAGCaCUGCCGCcAGUaca -5' |
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29611 | 5' | -57 | NC_006151.1 | + | 21595 | 0.67 | 0.809967 |
Target: 5'- cGAUgGCGUacggCGUGGCGGCGG-CGUa- -3' miRNA: 3'- -CUGgUGCGa---GCACUGCCGCCaGUAca -5' |
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29611 | 5' | -57 | NC_006151.1 | + | 112044 | 0.67 | 0.801148 |
Target: 5'- gGGCCgGCGggCGggcGGCGGCGGUgGUGg -3' miRNA: 3'- -CUGG-UGCgaGCa--CUGCCGCCAgUACa -5' |
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29611 | 5' | -57 | NC_006151.1 | + | 94318 | 0.67 | 0.801148 |
Target: 5'- uGGCCACGCUCaGcGAgcggaGGUGGUcCAUGUc -3' miRNA: 3'- -CUGGUGCGAG-CaCUg----CCGCCA-GUACA- -5' |
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29611 | 5' | -57 | NC_006151.1 | + | 48093 | 0.67 | 0.801148 |
Target: 5'- aGCCGCgaugucgccGCUCGUGGCGGUGcUgGUGUu -3' miRNA: 3'- cUGGUG---------CGAGCACUGCCGCcAgUACA- -5' |
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29611 | 5' | -57 | NC_006151.1 | + | 62042 | 0.67 | 0.792177 |
Target: 5'- cGCUGCGCcgCGUGGCGGUGcacgcgcgcgccGUCGUGa -3' miRNA: 3'- cUGGUGCGa-GCACUGCCGC------------CAGUACa -5' |
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29611 | 5' | -57 | NC_006151.1 | + | 135242 | 0.68 | 0.783063 |
Target: 5'- cACCACGUUgcucuCGGCGGUCAUGc -3' miRNA: 3'- cUGGUGCGAgcacuGCCGCCAGUACa -5' |
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29611 | 5' | -57 | NC_006151.1 | + | 125525 | 0.67 | 0.826277 |
Target: 5'- uGGCCAucuCGCggugCGUGgaggugcGCGGCGG-CGUGUa -3' miRNA: 3'- -CUGGU---GCGa---GCAC-------UGCCGCCaGUACA- -5' |
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29611 | 5' | -57 | NC_006151.1 | + | 45087 | 0.67 | 0.827118 |
Target: 5'- cACCGCGCggUGUGGCGucgauGgGGUCGUGc -3' miRNA: 3'- cUGGUGCGa-GCACUGC-----CgCCAGUACa -5' |
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29611 | 5' | -57 | NC_006151.1 | + | 136983 | 0.67 | 0.835434 |
Target: 5'- cGCCGCGC-CG-GGCGGCGGgcgCGc-- -3' miRNA: 3'- cUGGUGCGaGCaCUGCCGCCa--GUaca -5' |
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29611 | 5' | -57 | NC_006151.1 | + | 133342 | 0.66 | 0.874127 |
Target: 5'- cGGCCG-GUUcCGcGGCGGCGGUgGUGg -3' miRNA: 3'- -CUGGUgCGA-GCaCUGCCGCCAgUACa -5' |
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29611 | 5' | -57 | NC_006151.1 | + | 5543 | 0.66 | 0.874127 |
Target: 5'- aGCCGC-CUCGcGGCGGCGGgcUCGUc- -3' miRNA: 3'- cUGGUGcGAGCaCUGCCGCC--AGUAca -5' |
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29611 | 5' | -57 | NC_006151.1 | + | 57502 | 0.66 | 0.866794 |
Target: 5'- cGCaCGCGCUCGgccgcGGCGGCGG-CGg-- -3' miRNA: 3'- cUG-GUGCGAGCa----CUGCCGCCaGUaca -5' |
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29611 | 5' | -57 | NC_006151.1 | + | 44345 | 0.66 | 0.859253 |
Target: 5'- gGGCCGCGgaCGgguggGACGGCGGg----- -3' miRNA: 3'- -CUGGUGCgaGCa----CUGCCGCCaguaca -5' |
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29611 | 5' | -57 | NC_006151.1 | + | 5441 | 0.66 | 0.859253 |
Target: 5'- gGGCCGCGggcgacgguCUCGacggcGACGGUGGUgGUGg -3' miRNA: 3'- -CUGGUGC---------GAGCa----CUGCCGCCAgUACa -5' |
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29611 | 5' | -57 | NC_006151.1 | + | 138156 | 0.66 | 0.859253 |
Target: 5'- cGGCgCGCGCUCGaGGCcuucguGGCGGaCGUGg -3' miRNA: 3'- -CUG-GUGCGAGCaCUG------CCGCCaGUACa -5' |
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29611 | 5' | -57 | NC_006151.1 | + | 99579 | 0.66 | 0.859253 |
Target: 5'- uGCUGCGCgagGUGGCGGCGGcCGa-- -3' miRNA: 3'- cUGGUGCGag-CACUGCCGCCaGUaca -5' |
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29611 | 5' | -57 | NC_006151.1 | + | 77385 | 0.66 | 0.843566 |
Target: 5'- gGACCGCGCguacuUUGUGcACGGgGGcugcaUCGUGUc -3' miRNA: 3'- -CUGGUGCG-----AGCAC-UGCCgCC-----AGUACA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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