miRNA display CGI


Results 41 - 60 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29613 3' -58.1 NC_006151.1 + 100820 0.66 0.821481
Target:  5'- cGAgGCGGgcCCC--GACGCCGUGCCg -3'
miRNA:   3'- cCUaCGUCaaGGGccCUGCGGCGUGG- -5'
29613 3' -58.1 NC_006151.1 + 107741 0.66 0.819803
Target:  5'- ---aGCAGc-CCCGGGAgcccgcccccaaGCCGCACUc -3'
miRNA:   3'- ccuaCGUCaaGGGCCCUg-----------CGGCGUGG- -5'
29613 3' -58.1 NC_006151.1 + 105079 0.66 0.813026
Target:  5'- uGGAcgUGCAGg--CCGucgaGugGCUGCACCa -3'
miRNA:   3'- -CCU--ACGUCaagGGCc---CugCGGCGUGG- -5'
29613 3' -58.1 NC_006151.1 + 121191 0.66 0.813026
Target:  5'- --cUGCAcGcgCUCGGGGCGCgcacgcaGCACCu -3'
miRNA:   3'- ccuACGU-CaaGGGCCCUGCGg------CGUGG- -5'
29613 3' -58.1 NC_006151.1 + 130898 0.66 0.813026
Target:  5'- aGGcgGCGGccgUCgCCGucgucGGugGCCGgGCCc -3'
miRNA:   3'- -CCuaCGUCa--AG-GGC-----CCugCGGCgUGG- -5'
29613 3' -58.1 NC_006151.1 + 2895 0.66 0.813026
Target:  5'- cGAUGguGUcCagcacgaugagCCGGcGccGCGCCGCGCCg -3'
miRNA:   3'- cCUACguCAaG-----------GGCC-C--UGCGGCGUGG- -5'
29613 3' -58.1 NC_006151.1 + 81207 0.66 0.813026
Target:  5'- gGGccGCAGU--CCGGG-CGCCgGCGCg -3'
miRNA:   3'- -CCuaCGUCAagGGCCCuGCGG-CGUGg -5'
29613 3' -58.1 NC_006151.1 + 133812 0.66 0.813026
Target:  5'- cGGGUGCAcg-UCCGGGugGCguaacccaGgGCCa -3'
miRNA:   3'- -CCUACGUcaaGGGCCCugCGg-------CgUGG- -5'
29613 3' -58.1 NC_006151.1 + 84046 0.67 0.804415
Target:  5'- uGGUGCGG--CUgGGGGugggGCCGCACCu -3'
miRNA:   3'- cCUACGUCaaGGgCCCUg---CGGCGUGG- -5'
29613 3' -58.1 NC_006151.1 + 77470 0.67 0.804415
Target:  5'- ---cGCGGgaacgcgCCCGGGaaccGCGUCGuCGCCa -3'
miRNA:   3'- ccuaCGUCaa-----GGGCCC----UGCGGC-GUGG- -5'
29613 3' -58.1 NC_006151.1 + 66797 0.67 0.804415
Target:  5'- cGGcgGCGGggCCCGGGgACGaCGaCGgCg -3'
miRNA:   3'- -CCuaCGUCaaGGGCCC-UGCgGC-GUgG- -5'
29613 3' -58.1 NC_006151.1 + 38577 0.67 0.804415
Target:  5'- ---cGCGcg-CCCGGGGCccGCCGCcCCg -3'
miRNA:   3'- ccuaCGUcaaGGGCCCUG--CGGCGuGG- -5'
29613 3' -58.1 NC_006151.1 + 127538 0.67 0.803546
Target:  5'- ---aGCGGggCCCagGGGGCGUCGUcgucgugGCCg -3'
miRNA:   3'- ccuaCGUCaaGGG--CCCUGCGGCG-------UGG- -5'
29613 3' -58.1 NC_006151.1 + 76343 0.67 0.799176
Target:  5'- cGGGUGCGG--CCCGucgcgcgcgaucaucGGcUGCUGCACCu -3'
miRNA:   3'- -CCUACGUCaaGGGC---------------CCuGCGGCGUGG- -5'
29613 3' -58.1 NC_006151.1 + 109629 0.67 0.795655
Target:  5'- cGGUcCAGUUcCCCGGGcgagaggagcCGCCGCuGCCg -3'
miRNA:   3'- cCUAcGUCAA-GGGCCCu---------GCGGCG-UGG- -5'
29613 3' -58.1 NC_006151.1 + 34001 0.67 0.795655
Target:  5'- cGGAgggGCG--UCCCGGcGCGCCG-GCCc -3'
miRNA:   3'- -CCUa--CGUcaAGGGCCcUGCGGCgUGG- -5'
29613 3' -58.1 NC_006151.1 + 83122 0.67 0.795655
Target:  5'- cGGUcGCAGagCUCGGG-CGCCuuguacGCGCCa -3'
miRNA:   3'- cCUA-CGUCaaGGGCCCuGCGG------CGUGG- -5'
29613 3' -58.1 NC_006151.1 + 29216 0.67 0.795655
Target:  5'- gGGGUGgGGaugggUCaccgCCGGGuCgGCCGCGCCc -3'
miRNA:   3'- -CCUACgUCa----AG----GGCCCuG-CGGCGUGG- -5'
29613 3' -58.1 NC_006151.1 + 28485 0.67 0.795655
Target:  5'- uGGAUGCGugccaagUCCCGGGAagggGgCGguCCg -3'
miRNA:   3'- -CCUACGUca-----AGGGCCCUg---CgGCguGG- -5'
29613 3' -58.1 NC_006151.1 + 114890 0.67 0.795655
Target:  5'- ---aGCAGcUUCCCGGG-CGCgaggcccgggCGCACg -3'
miRNA:   3'- ccuaCGUC-AAGGGCCCuGCG----------GCGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.