miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29613 3' -58.1 NC_006151.1 + 106799 0.66 0.845825
Target:  5'- cGGcgGCGGUgcUCgUCGGGGCcCCGCuggugaucGCCa -3'
miRNA:   3'- -CCuaCGUCA--AG-GGCCCUGcGGCG--------UGG- -5'
29613 3' -58.1 NC_006151.1 + 109536 0.66 0.84504
Target:  5'- ---aGCAGcgcccCCCGGaGGCGCCGUggacguggcccgaGCCg -3'
miRNA:   3'- ccuaCGUCaa---GGGCC-CUGCGGCG-------------UGG- -5'
29613 3' -58.1 NC_006151.1 + 76686 0.66 0.842672
Target:  5'- gGGA-GCAGgggggagaguggCgCGGGcGCGCCGCgGCCg -3'
miRNA:   3'- -CCUaCGUCaa----------GgGCCC-UGCGGCG-UGG- -5'
29613 3' -58.1 NC_006151.1 + 31164 0.66 0.837887
Target:  5'- uGGGUcGCAGcgCCCuaaacuuggcacGGucCGCCGCACa -3'
miRNA:   3'- -CCUA-CGUCaaGGG------------CCcuGCGGCGUGg -5'
29613 3' -58.1 NC_006151.1 + 60902 0.66 0.837887
Target:  5'- ---aGCAGggcgUCCaCGcGGGCcaGUCGCGCCa -3'
miRNA:   3'- ccuaCGUCa---AGG-GC-CCUG--CGGCGUGG- -5'
29613 3' -58.1 NC_006151.1 + 38900 0.66 0.837887
Target:  5'- --cUGCccg-CCCGaGGugGCCcGCGCCu -3'
miRNA:   3'- ccuACGucaaGGGC-CCugCGG-CGUGG- -5'
29613 3' -58.1 NC_006151.1 + 118315 0.66 0.837887
Target:  5'- gGGAcUGC-GUgccCCCGaGcaGCGCCGCGCCc -3'
miRNA:   3'- -CCU-ACGuCAa--GGGCcC--UGCGGCGUGG- -5'
29613 3' -58.1 NC_006151.1 + 84492 0.66 0.837887
Target:  5'- aGGccGCugcGaUCCCGGGcaGCGC-GCGCCa -3'
miRNA:   3'- -CCuaCGu--CaAGGGCCC--UGCGgCGUGG- -5'
29613 3' -58.1 NC_006151.1 + 81576 0.66 0.834661
Target:  5'- cGGA-GCAGggucucgcgcgcgUCgCCGGGGcCGCCgGCGCg -3'
miRNA:   3'- -CCUaCGUCa------------AG-GGCCCU-GCGG-CGUGg -5'
29613 3' -58.1 NC_006151.1 + 13418 0.66 0.82977
Target:  5'- gGGAgccggGCccgcGUcCCCGGGGC-CCGCAUUg -3'
miRNA:   3'- -CCUa----CGu---CAaGGGCCCUGcGGCGUGG- -5'
29613 3' -58.1 NC_006151.1 + 64627 0.66 0.82977
Target:  5'- ---cGCcgg-CCgCGGGGCGCgGCGCCc -3'
miRNA:   3'- ccuaCGucaaGG-GCCCUGCGgCGUGG- -5'
29613 3' -58.1 NC_006151.1 + 67972 0.66 0.82977
Target:  5'- aGGAccacGCAGUcgcggcggCCCGccGGCGCCGCgGCCa -3'
miRNA:   3'- -CCUa---CGUCAa-------GGGCc-CUGCGGCG-UGG- -5'
29613 3' -58.1 NC_006151.1 + 36019 0.66 0.82977
Target:  5'- cGGcgGCAGccagggcUCCCGG--CGCCGCGgCu -3'
miRNA:   3'- -CCuaCGUCa------AGGGCCcuGCGGCGUgG- -5'
29613 3' -58.1 NC_006151.1 + 69432 0.66 0.828949
Target:  5'- aGGcgGCGccgccgccGUUCgcguccucgcgcgCCGcGGGCGCCGgCACCg -3'
miRNA:   3'- -CCuaCGU--------CAAG-------------GGC-CCUGCGGC-GUGG- -5'
29613 3' -58.1 NC_006151.1 + 122325 0.66 0.827301
Target:  5'- cGGUGCGcGUggacCCCGaGGACguggccaagaaccuGCCGCACg -3'
miRNA:   3'- cCUACGU-CAa---GGGC-CCUG--------------CGGCGUGg -5'
29613 3' -58.1 NC_006151.1 + 9056 0.66 0.821481
Target:  5'- -cGUGC---UCCgGGGGCGCCG-GCCg -3'
miRNA:   3'- ccUACGucaAGGgCCCUGCGGCgUGG- -5'
29613 3' -58.1 NC_006151.1 + 47885 0.66 0.821481
Target:  5'- ----cCAGacucccCCCGGGACGCucCGCGCCu -3'
miRNA:   3'- ccuacGUCaa----GGGCCCUGCG--GCGUGG- -5'
29613 3' -58.1 NC_006151.1 + 54366 0.66 0.821481
Target:  5'- aGGAcGUGG--CCCGGGACuggauGgCGCACCu -3'
miRNA:   3'- -CCUaCGUCaaGGGCCCUG-----CgGCGUGG- -5'
29613 3' -58.1 NC_006151.1 + 102481 0.66 0.821481
Target:  5'- ---cGCAGcUCUCGgcgugcuucauGGACGCCGCGgCg -3'
miRNA:   3'- ccuaCGUCaAGGGC-----------CCUGCGGCGUgG- -5'
29613 3' -58.1 NC_006151.1 + 28831 0.66 0.821481
Target:  5'- -aAUGCGGgcCCCgGGGACG-CGgGCCc -3'
miRNA:   3'- ccUACGUCaaGGG-CCCUGCgGCgUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.