miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29613 3' -58.1 NC_006151.1 + 13942 0.73 0.467067
Target:  5'- cGGggGCGGgcgcCCCGGGgacGCGCCG-GCCa -3'
miRNA:   3'- -CCuaCGUCaa--GGGCCC---UGCGGCgUGG- -5'
29613 3' -58.1 NC_006151.1 + 74137 0.72 0.476242
Target:  5'- cGGGUGCAGcgggUgCCGGGGguCGuCCGUGCCc -3'
miRNA:   3'- -CCUACGUCa---AgGGCCCU--GC-GGCGUGG- -5'
29613 3' -58.1 NC_006151.1 + 5604 0.72 0.485506
Target:  5'- ---cGCGGUcCCCuccggcggagGGGGCGCCGcCGCCg -3'
miRNA:   3'- ccuaCGUCAaGGG----------CCCUGCGGC-GUGG- -5'
29613 3' -58.1 NC_006151.1 + 20448 0.72 0.485506
Target:  5'- cGGA-GCGGggCUCGGGggugGCGCCGguCCc -3'
miRNA:   3'- -CCUaCGUCaaGGGCCC----UGCGGCguGG- -5'
29613 3' -58.1 NC_006151.1 + 141457 0.72 0.485506
Target:  5'- aGGAggGCGGUcuggagCCgGGGGCGCCGaguCCg -3'
miRNA:   3'- -CCUa-CGUCAa-----GGgCCCUGCGGCgu-GG- -5'
29613 3' -58.1 NC_006151.1 + 129331 0.72 0.485506
Target:  5'- cGGGUuaGCGGc-CCCGGGGCGgCCggcGCGCCg -3'
miRNA:   3'- -CCUA--CGUCaaGGGCCCUGC-GG---CGUGG- -5'
29613 3' -58.1 NC_006151.1 + 112399 0.72 0.504285
Target:  5'- ---cGCGGccUCCGGGAuCGCCGCGCg -3'
miRNA:   3'- ccuaCGUCaaGGGCCCU-GCGGCGUGg -5'
29613 3' -58.1 NC_006151.1 + 64773 0.72 0.504285
Target:  5'- cGGggGCuGGUUgCCGGGGCGCgaGCugGCCa -3'
miRNA:   3'- -CCuaCG-UCAAgGGCCCUGCGg-CG--UGG- -5'
29613 3' -58.1 NC_006151.1 + 60638 0.72 0.504285
Target:  5'- cGGG-GCGGggcUCCCGGcccGCGCCGCGuCCu -3'
miRNA:   3'- -CCUaCGUCa--AGGGCCc--UGCGGCGU-GG- -5'
29613 3' -58.1 NC_006151.1 + 4258 0.72 0.504285
Target:  5'- aGGGcaGCAGgcgCUCGaGGACGCCGCGgCa -3'
miRNA:   3'- -CCUa-CGUCaa-GGGC-CCUGCGGCGUgG- -5'
29613 3' -58.1 NC_006151.1 + 87244 0.71 0.533018
Target:  5'- ---cGCAG---CCGGGGCGCUGUACCc -3'
miRNA:   3'- ccuaCGUCaagGGCCCUGCGGCGUGG- -5'
29613 3' -58.1 NC_006151.1 + 3250 0.71 0.533018
Target:  5'- cGGcgGCGGag--CGGGGCGCCGCGgCg -3'
miRNA:   3'- -CCuaCGUCaaggGCCCUGCGGCGUgG- -5'
29613 3' -58.1 NC_006151.1 + 93742 0.71 0.533018
Target:  5'- uGGAUGCGGgccUCgUCGGGGCGCgGgGCg -3'
miRNA:   3'- -CCUACGUCa--AG-GGCCCUGCGgCgUGg -5'
29613 3' -58.1 NC_006151.1 + 52499 0.71 0.533018
Target:  5'- cGGgcGCcag-CCCGGGGCGCUGCAg- -3'
miRNA:   3'- -CCuaCGucaaGGGCCCUGCGGCGUgg -5'
29613 3' -58.1 NC_006151.1 + 78023 0.71 0.533018
Target:  5'- -uGUGCAGgugcgcuacaUCCCGGcGACGCgGCGCa -3'
miRNA:   3'- ccUACGUCa---------AGGGCC-CUGCGgCGUGg -5'
29613 3' -58.1 NC_006151.1 + 95108 0.71 0.536895
Target:  5'- ---aGCAGcUCCuCGGcgauggcggcguugaGGCGCCGCGCCg -3'
miRNA:   3'- ccuaCGUCaAGG-GCC---------------CUGCGGCGUGG- -5'
29613 3' -58.1 NC_006151.1 + 100487 0.71 0.542728
Target:  5'- uGGGccUGCAGgcgCCCGuguuccGGACGCUguGCGCCg -3'
miRNA:   3'- -CCU--ACGUCaa-GGGC------CCUGCGG--CGUGG- -5'
29613 3' -58.1 NC_006151.1 + 87417 0.71 0.542728
Target:  5'- uGGUGCAGg-CCCagccGGugGCCGUGCCc -3'
miRNA:   3'- cCUACGUCaaGGGc---CCugCGGCGUGG- -5'
29613 3' -58.1 NC_006151.1 + 116306 0.71 0.552496
Target:  5'- ---cGCAGUagcgCCCGauGACGCCGCGCUc -3'
miRNA:   3'- ccuaCGUCAa---GGGCc-CUGCGGCGUGG- -5'
29613 3' -58.1 NC_006151.1 + 63698 0.71 0.552496
Target:  5'- gGGcGUGCGcGUUCgCGGcGACGUgGCGCCc -3'
miRNA:   3'- -CC-UACGU-CAAGgGCC-CUGCGgCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.