miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29613 3' -58.1 NC_006151.1 + 123338 0.81 0.145325
Target:  5'- cGGUGCAGcgccacCCCGuGGACGCCGCGCUc -3'
miRNA:   3'- cCUACGUCaa----GGGC-CCUGCGGCGUGG- -5'
29613 3' -58.1 NC_006151.1 + 131445 0.8 0.177362
Target:  5'- gGGcgGCGGgcggaagUCCGGG-CGCCGCACCu -3'
miRNA:   3'- -CCuaCGUCaa-----GGGCCCuGCGGCGUGG- -5'
29613 3' -58.1 NC_006151.1 + 32594 0.79 0.200449
Target:  5'- gGGAaGCGGgaaggggaagCgCGGGGCGCCGCGCCu -3'
miRNA:   3'- -CCUaCGUCaa--------GgGCCCUGCGGCGUGG- -5'
29613 3' -58.1 NC_006151.1 + 13151 0.77 0.279259
Target:  5'- cGAUGCGGUcccggaaauUUCCGGGAcgguCGCCGCgGCCg -3'
miRNA:   3'- cCUACGUCA---------AGGGCCCU----GCGGCG-UGG- -5'
29613 3' -58.1 NC_006151.1 + 3682 0.77 0.285743
Target:  5'- gGGcgGCGGgcCCCGGGcGCGCgGCGCUu -3'
miRNA:   3'- -CCuaCGUCaaGGGCCC-UGCGgCGUGG- -5'
29613 3' -58.1 NC_006151.1 + 120768 0.75 0.333717
Target:  5'- uGGGUGCGGcgCCCGcuggcGGACGCggccgacgcggagCGCGCCg -3'
miRNA:   3'- -CCUACGUCaaGGGC-----CCUGCG-------------GCGUGG- -5'
29613 3' -58.1 NC_006151.1 + 39953 0.75 0.334454
Target:  5'- uGGUGCuGacCCCGGG-CGCCGuCGCCg -3'
miRNA:   3'- cCUACGuCaaGGGCCCuGCGGC-GUGG- -5'
29613 3' -58.1 NC_006151.1 + 13694 0.75 0.357116
Target:  5'- -aAUGCGGgcUCCCGGGACGCgGgCACg -3'
miRNA:   3'- ccUACGUCa-AGGGCCCUGCGgC-GUGg -5'
29613 3' -58.1 NC_006151.1 + 51118 0.75 0.35789
Target:  5'- aGGAUGCGGgccucgcgcagggcgUCCCGGaGcACGUCGgGCCg -3'
miRNA:   3'- -CCUACGUCa--------------AGGGCC-C-UGCGGCgUGG- -5'
29613 3' -58.1 NC_006151.1 + 88406 0.75 0.364906
Target:  5'- cGGccGCGaggCCCGGGACGuCCGCGCg -3'
miRNA:   3'- -CCuaCGUcaaGGGCCCUGC-GGCGUGg -5'
29613 3' -58.1 NC_006151.1 + 25389 0.75 0.364906
Target:  5'- cGGcgGUGGUUCUCgaccgcgacgGGGGCGCCGcCGCCc -3'
miRNA:   3'- -CCuaCGUCAAGGG----------CCCUGCGGC-GUGG- -5'
29613 3' -58.1 NC_006151.1 + 47708 0.74 0.39722
Target:  5'- cGGUGCGGcgUCCCGGGAa-CUGCAUCc -3'
miRNA:   3'- cCUACGUCa-AGGGCCCUgcGGCGUGG- -5'
29613 3' -58.1 NC_006151.1 + 89129 0.74 0.414053
Target:  5'- gGGcgGCGGgaCCgGGGGCGucgagaCCGCGCCc -3'
miRNA:   3'- -CCuaCGUCaaGGgCCCUGC------GGCGUGG- -5'
29613 3' -58.1 NC_006151.1 + 25314 0.73 0.448996
Target:  5'- cGGGUGCGGUgugaaugagCgCCGGGACGgCCgGCguGCCg -3'
miRNA:   3'- -CCUACGUCAa--------G-GGCCCUGC-GG-CG--UGG- -5'
29613 3' -58.1 NC_006151.1 + 28308 0.73 0.448996
Target:  5'- uGGccgGCGcGUcCCCGGGGCGCC-CGCCc -3'
miRNA:   3'- -CCua-CGU-CAaGGGCCCUGCGGcGUGG- -5'
29613 3' -58.1 NC_006151.1 + 50444 0.73 0.448996
Target:  5'- cGGcgGCcuGGgcaccgCCCGcGGGCGCuCGCGCCa -3'
miRNA:   3'- -CCuaCG--UCaa----GGGC-CCUGCG-GCGUGG- -5'
29613 3' -58.1 NC_006151.1 + 33273 0.73 0.455277
Target:  5'- uGGcgGCGGccaucgcccgacccUUcCCCGGGGCGCgCGCGCg -3'
miRNA:   3'- -CCuaCGUC--------------AA-GGGCCCUGCG-GCGUGg -5'
29613 3' -58.1 NC_006151.1 + 31585 0.73 0.462513
Target:  5'- gGGggGCGGcgcgcuccgcgcUCCCccgccgccugggcgGGGAUGCCGCGCCg -3'
miRNA:   3'- -CCuaCGUCa-----------AGGG--------------CCCUGCGGCGUGG- -5'
29613 3' -58.1 NC_006151.1 + 122055 0.73 0.467067
Target:  5'- cGGAgcUGCAGUUCCUccacGACGCCGagaACCu -3'
miRNA:   3'- -CCU--ACGUCAAGGGcc--CUGCGGCg--UGG- -5'
29613 3' -58.1 NC_006151.1 + 50877 0.73 0.467067
Target:  5'- cGGAccccg-UCCCGGGGCcgGCCGCGCCc -3'
miRNA:   3'- -CCUacgucaAGGGCCCUG--CGGCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.