miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29613 3' -58.1 NC_006151.1 + 1810 0.71 0.562316
Target:  5'- gGGAgGCAGgcgCCgGGGAggcaagcgcCGCCGgGCCg -3'
miRNA:   3'- -CCUaCGUCaa-GGgCCCU---------GCGGCgUGG- -5'
29613 3' -58.1 NC_006151.1 + 2783 0.68 0.739461
Target:  5'- cGGAgcucGCGGcaCCCGGGccagcgcACGgCGCACUg -3'
miRNA:   3'- -CCUa---CGUCaaGGGCCC-------UGCgGCGUGG- -5'
29613 3' -58.1 NC_006151.1 + 2895 0.66 0.813026
Target:  5'- cGAUGguGUcCagcacgaugagCCGGcGccGCGCCGCGCCg -3'
miRNA:   3'- cCUACguCAaG-----------GGCC-C--UGCGGCGUGG- -5'
29613 3' -58.1 NC_006151.1 + 3250 0.71 0.533018
Target:  5'- cGGcgGCGGag--CGGGGCGCCGCGgCg -3'
miRNA:   3'- -CCuaCGUCaaggGCCCUGCGGCGUgG- -5'
29613 3' -58.1 NC_006151.1 + 3462 0.7 0.64202
Target:  5'- gGGGUGCucgggcauGggCCCGagcGGGCGCCGgaGCCg -3'
miRNA:   3'- -CCUACGu-------CaaGGGC---CCUGCGGCg-UGG- -5'
29613 3' -58.1 NC_006151.1 + 3626 0.66 0.845825
Target:  5'- ---gGCcGUcCCCGcGGAgGgCCGCGCCg -3'
miRNA:   3'- ccuaCGuCAaGGGC-CCUgC-GGCGUGG- -5'
29613 3' -58.1 NC_006151.1 + 3682 0.77 0.285743
Target:  5'- gGGcgGCGGgcCCCGGGcGCGCgGCGCUu -3'
miRNA:   3'- -CCuaCGUCaaGGGCCC-UGCGgCGUGG- -5'
29613 3' -58.1 NC_006151.1 + 3944 0.68 0.740414
Target:  5'- cGGgcGCGGgcUCCGcGGGCccggGCCGCGCg -3'
miRNA:   3'- -CCuaCGUCaaGGGC-CCUG----CGGCGUGg -5'
29613 3' -58.1 NC_006151.1 + 4258 0.72 0.504285
Target:  5'- aGGGcaGCAGgcgCUCGaGGACGCCGCGgCa -3'
miRNA:   3'- -CCUa-CGUCaa-GGGC-CCUGCGGCGUgG- -5'
29613 3' -58.1 NC_006151.1 + 5029 0.68 0.730841
Target:  5'- cGGGgcCGGggCCgGGGAgGCCGCGgCg -3'
miRNA:   3'- -CCUacGUCaaGGgCCCUgCGGCGUgG- -5'
29613 3' -58.1 NC_006151.1 + 5107 0.69 0.700681
Target:  5'- cGGAgacgGUGGcggCCCggcgcgggcgaguGGGGCGCCGgGCCg -3'
miRNA:   3'- -CCUa---CGUCaa-GGG-------------CCCUGCGGCgUGG- -5'
29613 3' -58.1 NC_006151.1 + 5250 0.68 0.711457
Target:  5'- cGGcgGCGGgggCCCGGGGgGCggagggcgagCGgGCCg -3'
miRNA:   3'- -CCuaCGUCaa-GGGCCCUgCG----------GCgUGG- -5'
29613 3' -58.1 NC_006151.1 + 5604 0.72 0.485506
Target:  5'- ---cGCGGUcCCCuccggcggagGGGGCGCCGcCGCCg -3'
miRNA:   3'- ccuaCGUCAaGGG----------CCCUGCGGC-GUGG- -5'
29613 3' -58.1 NC_006151.1 + 5658 0.67 0.759281
Target:  5'- cGGcgGCGGgggaggCUgGGGAagcgggccccCGCCGUGCCg -3'
miRNA:   3'- -CCuaCGUCaa----GGgCCCU----------GCGGCGUGG- -5'
29613 3' -58.1 NC_006151.1 + 5719 0.66 0.845825
Target:  5'- uGGcuGUGCuGGUggcgCCgGGGuccgAgGCCGCGCCg -3'
miRNA:   3'- -CC--UACG-UCAa---GGgCCC----UgCGGCGUGG- -5'
29613 3' -58.1 NC_006151.1 + 8300 0.66 0.851272
Target:  5'- cGGgcGCcgcgucccgccccgAGccCCCGGGGCGCgCGgGCCu -3'
miRNA:   3'- -CCuaCG--------------UCaaGGGCCCUGCG-GCgUGG- -5'
29613 3' -58.1 NC_006151.1 + 9056 0.66 0.821481
Target:  5'- -cGUGC---UCCgGGGGCGCCG-GCCg -3'
miRNA:   3'- ccUACGucaAGGgCCCUGCGGCgUGG- -5'
29613 3' -58.1 NC_006151.1 + 10470 0.68 0.75084
Target:  5'- cGGcgGCGGUgaaggaggagagccgCCCGGcGcGCGCC-CGCCg -3'
miRNA:   3'- -CCuaCGUCAa--------------GGGCC-C-UGCGGcGUGG- -5'
29613 3' -58.1 NC_006151.1 + 11152 0.69 0.701664
Target:  5'- --cUGCGGUUUCCccuGGCGCgGCGCCu -3'
miRNA:   3'- ccuACGUCAAGGGcc-CUGCGgCGUGG- -5'
29613 3' -58.1 NC_006151.1 + 11306 0.69 0.691815
Target:  5'- ---cGCuc-UCCCGGGcCGCCGCgauACCg -3'
miRNA:   3'- ccuaCGucaAGGGCCCuGCGGCG---UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.