miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29613 3' -58.1 NC_006151.1 + 141711 0.71 0.572182
Target:  5'- cGGAcGCGGUgCCCGGGGCGUUaaUACCc -3'
miRNA:   3'- -CCUaCGUCAaGGGCCCUGCGGc-GUGG- -5'
29613 3' -58.1 NC_006151.1 + 141457 0.72 0.485506
Target:  5'- aGGAggGCGGUcuggagCCgGGGGCGCCGaguCCg -3'
miRNA:   3'- -CCUa-CGUCAa-----GGgCCCUGCGGCgu-GG- -5'
29613 3' -58.1 NC_006151.1 + 141380 0.66 0.853578
Target:  5'- cGGggGCGGgcCCCGGGcaaacaGCGgCGUGuCCg -3'
miRNA:   3'- -CCuaCGUCaaGGGCCC------UGCgGCGU-GG- -5'
29613 3' -58.1 NC_006151.1 + 140000 0.7 0.64202
Target:  5'- gGGAgacGCucauGUUCCaCGGGGCcgacCUGCACCg -3'
miRNA:   3'- -CCUa--CGu---CAAGG-GCCCUGc---GGCGUGG- -5'
29613 3' -58.1 NC_006151.1 + 139560 0.7 0.61199
Target:  5'- aGGA-GCGGcgCCCGGucCGCgaGCGCCu -3'
miRNA:   3'- -CCUaCGUCaaGGGCCcuGCGg-CGUGG- -5'
29613 3' -58.1 NC_006151.1 + 138696 0.66 0.853578
Target:  5'- cGGAcGCGcugagCCCGGcGcugcGCGCCGCGCg -3'
miRNA:   3'- -CCUaCGUcaa--GGGCC-C----UGCGGCGUGg -5'
29613 3' -58.1 NC_006151.1 + 137100 0.68 0.740414
Target:  5'- ---cGCGGUgcuggCCgGGGACGCCuggggGCGCg -3'
miRNA:   3'- ccuaCGUCAa----GGgCCCUGCGG-----CGUGg -5'
29613 3' -58.1 NC_006151.1 + 136925 0.67 0.777717
Target:  5'- aGGAgcaGCAGcagCCGGG-CGCCgacgGCGCCg -3'
miRNA:   3'- -CCUa--CGUCaagGGCCCuGCGG----CGUGG- -5'
29613 3' -58.1 NC_006151.1 + 136632 0.68 0.730841
Target:  5'- cGGAccccGCGGcgCCCguGGGGCGCuCGCcCCu -3'
miRNA:   3'- -CCUa---CGUCaaGGG--CCCUGCG-GCGuGG- -5'
29613 3' -58.1 NC_006151.1 + 134425 0.69 0.681918
Target:  5'- uGGUGCuGcccCCCgGGGGCGCCGagACCg -3'
miRNA:   3'- cCUACGuCaa-GGG-CCCUGCGGCg-UGG- -5'
29613 3' -58.1 NC_006151.1 + 134266 0.67 0.766711
Target:  5'- aGGUGCAGgcgauuguagcCCCGGGcCGCC-CACg -3'
miRNA:   3'- cCUACGUCaa---------GGGCCCuGCGGcGUGg -5'
29613 3' -58.1 NC_006151.1 + 133812 0.66 0.813026
Target:  5'- cGGGUGCAcg-UCCGGGugGCguaacccaGgGCCa -3'
miRNA:   3'- -CCUACGUcaaGGGCCCugCGg-------CgUGG- -5'
29613 3' -58.1 NC_006151.1 + 132854 0.69 0.662016
Target:  5'- gGGcgGCcgg-CCCGGG--GCCGCGCCc -3'
miRNA:   3'- -CCuaCGucaaGGGCCCugCGGCGUGG- -5'
29613 3' -58.1 NC_006151.1 + 131544 0.68 0.721185
Target:  5'- --uUGCgAGcgCCUcGGGCGCCGCACg -3'
miRNA:   3'- ccuACG-UCaaGGGcCCUGCGGCGUGg -5'
29613 3' -58.1 NC_006151.1 + 131445 0.8 0.177362
Target:  5'- gGGcgGCGGgcggaagUCCGGG-CGCCGCACCu -3'
miRNA:   3'- -CCuaCGUCaa-----GGGCCCuGCGGCGUGG- -5'
29613 3' -58.1 NC_006151.1 + 130898 0.66 0.813026
Target:  5'- aGGcgGCGGccgUCgCCGucgucGGugGCCGgGCCc -3'
miRNA:   3'- -CCuaCGUCa--AG-GGC-----CCugCGGCgUGG- -5'
29613 3' -58.1 NC_006151.1 + 129532 0.7 0.61199
Target:  5'- cGAcgGgGGggCCCGGGGcCGCCGUcaACCg -3'
miRNA:   3'- cCUa-CgUCaaGGGCCCU-GCGGCG--UGG- -5'
29613 3' -58.1 NC_006151.1 + 129331 0.72 0.485506
Target:  5'- cGGGUuaGCGGc-CCCGGGGCGgCCggcGCGCCg -3'
miRNA:   3'- -CCUA--CGUCaaGGGCCCUGC-GG---CGUGG- -5'
29613 3' -58.1 NC_006151.1 + 129240 0.69 0.652026
Target:  5'- cGGGUGCGcccCUCGGuGACGCgGCGCg -3'
miRNA:   3'- -CCUACGUcaaGGGCC-CUGCGgCGUGg -5'
29613 3' -58.1 NC_006151.1 + 127538 0.67 0.803546
Target:  5'- ---aGCGGggCCCagGGGGCGUCGUcgucgugGCCg -3'
miRNA:   3'- ccuaCGUCaaGGG--CCCUGCGGCG-------UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.