miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29613 3' -58.1 NC_006151.1 + 13151 0.77 0.279259
Target:  5'- cGAUGCGGUcccggaaauUUCCGGGAcgguCGCCGCgGCCg -3'
miRNA:   3'- cCUACGUCA---------AGGGCCCU----GCGGCG-UGG- -5'
29613 3' -58.1 NC_006151.1 + 13418 0.66 0.82977
Target:  5'- gGGAgccggGCccgcGUcCCCGGGGC-CCGCAUUg -3'
miRNA:   3'- -CCUa----CGu---CAaGGGCCCUGcGGCGUGG- -5'
29613 3' -58.1 NC_006151.1 + 13694 0.75 0.357116
Target:  5'- -aAUGCGGgcUCCCGGGACGCgGgCACg -3'
miRNA:   3'- ccUACGUCa-AGGGCCCUGCGgC-GUGg -5'
29613 3' -58.1 NC_006151.1 + 13754 0.66 0.851272
Target:  5'- ---cGCGGgccggaccgcccccUUCCCGGGACuugGCaCGCAUCc -3'
miRNA:   3'- ccuaCGUC--------------AAGGGCCCUG---CG-GCGUGG- -5'
29613 3' -58.1 NC_006151.1 + 13942 0.73 0.467067
Target:  5'- cGGggGCGGgcgcCCCGGGgacGCGCCG-GCCa -3'
miRNA:   3'- -CCuaCGUCaa--GGGCCC---UGCGGCgUGG- -5'
29613 3' -58.1 NC_006151.1 + 17708 0.68 0.730841
Target:  5'- aGGcUGCuGUgugcgCCCGGGuGCGCCgGgGCCc -3'
miRNA:   3'- -CCuACGuCAa----GGGCCC-UGCGG-CgUGG- -5'
29613 3' -58.1 NC_006151.1 + 18310 0.7 0.59203
Target:  5'- cGGA-GCGGggcgccUCCuCGGGGCGCaCGUACa -3'
miRNA:   3'- -CCUaCGUCa-----AGG-GCCCUGCG-GCGUGg -5'
29613 3' -58.1 NC_006151.1 + 18765 0.68 0.748953
Target:  5'- gGGGUGCccGGggCCCGGGccgGgGCCGUcagcuccuugaugACCg -3'
miRNA:   3'- -CCUACG--UCaaGGGCCC---UgCGGCG-------------UGG- -5'
29613 3' -58.1 NC_006151.1 + 19598 0.69 0.661017
Target:  5'- cGGAcggGCAGgaacguccagaUCCCGGccaccacGGCGCCGuCGCCg -3'
miRNA:   3'- -CCUa--CGUCa----------AGGGCC-------CUGCGGC-GUGG- -5'
29613 3' -58.1 NC_006151.1 + 20134 0.69 0.680926
Target:  5'- gGGggGCGGgcgCCgCGGGGgcggcgcguggacCGCCGgGCCg -3'
miRNA:   3'- -CCuaCGUCaa-GG-GCCCU-------------GCGGCgUGG- -5'
29613 3' -58.1 NC_006151.1 + 20448 0.72 0.485506
Target:  5'- cGGA-GCGGggCUCGGGggugGCGCCGguCCc -3'
miRNA:   3'- -CCUaCGUCaaGGGCCC----UGCGGCguGG- -5'
29613 3' -58.1 NC_006151.1 + 22062 0.67 0.768557
Target:  5'- cGAUGCGGUaccaggCCaCGuGGGCGCgGUACg -3'
miRNA:   3'- cCUACGUCAa-----GG-GC-CCUGCGgCGUGg -5'
29613 3' -58.1 NC_006151.1 + 23692 0.68 0.740414
Target:  5'- cGGAggGCAuggcGUcCCCGGGGCaGCCGUAgUa -3'
miRNA:   3'- -CCUa-CGU----CAaGGGCCCUG-CGGCGUgG- -5'
29613 3' -58.1 NC_006151.1 + 25314 0.73 0.448996
Target:  5'- cGGGUGCGGUgugaaugagCgCCGGGACGgCCgGCguGCCg -3'
miRNA:   3'- -CCUACGUCAa--------G-GGCCCUGC-GG-CG--UGG- -5'
29613 3' -58.1 NC_006151.1 + 25389 0.75 0.364906
Target:  5'- cGGcgGUGGUUCUCgaccgcgacgGGGGCGCCGcCGCCc -3'
miRNA:   3'- -CCuaCGUCAAGGG----------CCCUGCGGC-GUGG- -5'
29613 3' -58.1 NC_006151.1 + 28110 0.69 0.691815
Target:  5'- gGGgcGCGGcUCCucgucggcuCGGGGCGCgcucCGCGCCu -3'
miRNA:   3'- -CCuaCGUCaAGG---------GCCCUGCG----GCGUGG- -5'
29613 3' -58.1 NC_006151.1 + 28308 0.73 0.448996
Target:  5'- uGGccgGCGcGUcCCCGGGGCGCC-CGCCc -3'
miRNA:   3'- -CCua-CGU-CAaGGGCCCUGCGGcGUGG- -5'
29613 3' -58.1 NC_006151.1 + 28485 0.67 0.795655
Target:  5'- uGGAUGCGugccaagUCCCGGGAagggGgCGguCCg -3'
miRNA:   3'- -CCUACGUca-----AGGGCCCUg---CgGCguGG- -5'
29613 3' -58.1 NC_006151.1 + 28831 0.66 0.821481
Target:  5'- -aAUGCGGgcCCCgGGGACG-CGgGCCc -3'
miRNA:   3'- ccUACGUCaaGGG-CCCUGCgGCgUGG- -5'
29613 3' -58.1 NC_006151.1 + 29216 0.67 0.795655
Target:  5'- gGGGUGgGGaugggUCaccgCCGGGuCgGCCGCGCCc -3'
miRNA:   3'- -CCUACgUCa----AG----GGCCCuG-CGGCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.