miRNA display CGI


Results 1 - 20 of 26 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29613 5' -51.9 NC_006151.1 + 19075 0.66 0.981852
Target:  5'- cGCGC-GCGGgugGUAGAUGCaG-GGCUc -3'
miRNA:   3'- -CGCGaCGUCa--UAUCUAUGaCgCCGAc -5'
29613 5' -51.9 NC_006151.1 + 21333 0.66 0.981852
Target:  5'- gGCGCgGCGGg--GGu--CcGCGGCUGg -3'
miRNA:   3'- -CGCGaCGUCauaUCuauGaCGCCGAC- -5'
29613 5' -51.9 NC_006151.1 + 127813 0.66 0.979643
Target:  5'- gGCGCgagguccuUGCGGUucacguacGUGGcgGCgucGCGGCUGc -3'
miRNA:   3'- -CGCG--------ACGUCA--------UAUCuaUGa--CGCCGAC- -5'
29613 5' -51.9 NC_006151.1 + 120254 0.66 0.97724
Target:  5'- cGCGCgugaGCuucg-AGGUGCUGCGGgaGc -3'
miRNA:   3'- -CGCGa---CGucauaUCUAUGACGCCgaC- -5'
29613 5' -51.9 NC_006151.1 + 121312 0.66 0.974634
Target:  5'- gGCGCUGgAGcGUGGAg---GCGGCc- -3'
miRNA:   3'- -CGCGACgUCaUAUCUaugaCGCCGac -5'
29613 5' -51.9 NC_006151.1 + 104586 0.66 0.974634
Target:  5'- cGUGCUGCAGgccGGcgGCagccGCGGCg- -3'
miRNA:   3'- -CGCGACGUCauaUCuaUGa---CGCCGac -5'
29613 5' -51.9 NC_006151.1 + 103744 0.66 0.971818
Target:  5'- gGCGCgGCAGUGcgAGGaGCgcgccGCGGCg- -3'
miRNA:   3'- -CGCGaCGUCAUa-UCUaUGa----CGCCGac -5'
29613 5' -51.9 NC_006151.1 + 73334 0.67 0.968784
Target:  5'- gGCGCcGCGcGUGgcgaagAGGUuCUGCGGCa- -3'
miRNA:   3'- -CGCGaCGU-CAUa-----UCUAuGACGCCGac -5'
29613 5' -51.9 NC_006151.1 + 2589 0.67 0.965525
Target:  5'- cGCGCUgGCGGU--AGGcGCgcgGCGGCa- -3'
miRNA:   3'- -CGCGA-CGUCAuaUCUaUGa--CGCCGac -5'
29613 5' -51.9 NC_006151.1 + 95918 0.67 0.965525
Target:  5'- cGCGCgUGCAGUcgcccGAggGCgUGCGGUUGa -3'
miRNA:   3'- -CGCG-ACGUCAuau--CUa-UG-ACGCCGAC- -5'
29613 5' -51.9 NC_006151.1 + 103827 0.67 0.962033
Target:  5'- gGCgGCgGCcGUGgAGAUGCUcggGCGGCUGc -3'
miRNA:   3'- -CG-CGaCGuCAUaUCUAUGA---CGCCGAC- -5'
29613 5' -51.9 NC_006151.1 + 49175 0.67 0.954328
Target:  5'- cGCGCcGCG----GGGUGCUGCuGCUGa -3'
miRNA:   3'- -CGCGaCGUcauaUCUAUGACGcCGAC- -5'
29613 5' -51.9 NC_006151.1 + 105350 0.68 0.945631
Target:  5'- cGCGCUGCAGacggcgaccaUGgAGGUGCUG-GcGCUGc -3'
miRNA:   3'- -CGCGACGUC----------AUaUCUAUGACgC-CGAC- -5'
29613 5' -51.9 NC_006151.1 + 82625 0.68 0.945631
Target:  5'- gGCGCcGCGGUGggcgcgGGAcccccCUGCGGCg- -3'
miRNA:   3'- -CGCGaCGUCAUa-----UCUau---GACGCCGac -5'
29613 5' -51.9 NC_006151.1 + 74314 0.68 0.945631
Target:  5'- gGCGUcGUGGUGcGGGUGCaGgGGCUGg -3'
miRNA:   3'- -CGCGaCGUCAUaUCUAUGaCgCCGAC- -5'
29613 5' -51.9 NC_006151.1 + 103797 0.68 0.945631
Target:  5'- gGCGCUGCAGgccgc--GCUGuCGGCg- -3'
miRNA:   3'- -CGCGACGUCauaucuaUGAC-GCCGac -5'
29613 5' -51.9 NC_006151.1 + 125534 0.68 0.940901
Target:  5'- cGCGgUGC-GUGgAGGUGCgcgGCGGCg- -3'
miRNA:   3'- -CGCgACGuCAUaUCUAUGa--CGCCGac -5'
29613 5' -51.9 NC_006151.1 + 105194 0.68 0.936423
Target:  5'- gGCGCUGCAGacgcugcgccaggagGcGGAcacGCUGCGGCa- -3'
miRNA:   3'- -CGCGACGUCa--------------UaUCUa--UGACGCCGac -5'
29613 5' -51.9 NC_006151.1 + 61759 0.68 0.935912
Target:  5'- cGCGgUcGCGGgggccguGGUGCUGCGGCg- -3'
miRNA:   3'- -CGCgA-CGUCauau---CUAUGACGCCGac -5'
29613 5' -51.9 NC_006151.1 + 84031 0.68 0.930664
Target:  5'- cCGaCUGC-GUGUGcGUGgUGCGGCUGg -3'
miRNA:   3'- cGC-GACGuCAUAUcUAUgACGCCGAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.