miRNA display CGI


Results 41 - 60 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29614 5' -53.7 NC_006151.1 + 10013 0.67 0.915899
Target:  5'- aGCGgcgGCgGCGGUc-GCCGCGGCc-- -3'
miRNA:   3'- gCGCa--UGaCGUCAaaUGGCGCCGacg -5'
29614 5' -53.7 NC_006151.1 + 58738 0.67 0.915899
Target:  5'- uCGCGUcGC-GCAGc--GCCGCGGCcaccGCg -3'
miRNA:   3'- -GCGCA-UGaCGUCaaaUGGCGCCGa---CG- -5'
29614 5' -53.7 NC_006151.1 + 65034 0.67 0.915899
Target:  5'- -uCGUACgGCAGgggGCCcgGCGGCgGCg -3'
miRNA:   3'- gcGCAUGaCGUCaaaUGG--CGCCGaCG- -5'
29614 5' -53.7 NC_006151.1 + 69975 0.67 0.915899
Target:  5'- gCGCGggcGCUGCA----GCgGCGGCaGCg -3'
miRNA:   3'- -GCGCa--UGACGUcaaaUGgCGCCGaCG- -5'
29614 5' -53.7 NC_006151.1 + 71967 0.67 0.915899
Target:  5'- gGCGUugUcGCGGU--GCgGCGGggGCa -3'
miRNA:   3'- gCGCAugA-CGUCAaaUGgCGCCgaCG- -5'
29614 5' -53.7 NC_006151.1 + 55063 0.67 0.915899
Target:  5'- gGCGaggACccgGCGGgcucgGCCGCGGC-GCg -3'
miRNA:   3'- gCGCa--UGa--CGUCaaa--UGGCGCCGaCG- -5'
29614 5' -53.7 NC_006151.1 + 57499 0.67 0.915899
Target:  5'- aCGCGcAC-GCGcucgGCCGCGGCgGCg -3'
miRNA:   3'- -GCGCaUGaCGUcaaaUGGCGCCGaCG- -5'
29614 5' -53.7 NC_006151.1 + 130465 0.68 0.909867
Target:  5'- gGCGUGgUGCAGggcgauggccUGCCGCaGCgcgcgGCg -3'
miRNA:   3'- gCGCAUgACGUCaa--------AUGGCGcCGa----CG- -5'
29614 5' -53.7 NC_006151.1 + 104280 0.68 0.909867
Target:  5'- gGCGggcccgccGCUGCAGgcgcUGCaGCGGCUGa -3'
miRNA:   3'- gCGCa-------UGACGUCaa--AUGgCGCCGACg -5'
29614 5' -53.7 NC_006151.1 + 18977 0.68 0.909867
Target:  5'- aGCGgGCUGCacgAGgcgUACgCGCGGC-GCg -3'
miRNA:   3'- gCGCaUGACG---UCaa-AUG-GCGCCGaCG- -5'
29614 5' -53.7 NC_006151.1 + 105661 0.68 0.90359
Target:  5'- uGCGc-CUGCAGUUcuacgcggccUACgGCGGC-GCg -3'
miRNA:   3'- gCGCauGACGUCAA----------AUGgCGCCGaCG- -5'
29614 5' -53.7 NC_006151.1 + 56175 0.68 0.90359
Target:  5'- cCGCGUGCUcucGCuGgccgUGCCGCcGGUgGCg -3'
miRNA:   3'- -GCGCAUGA---CGuCaa--AUGGCG-CCGaCG- -5'
29614 5' -53.7 NC_006151.1 + 77390 0.68 0.90359
Target:  5'- gCGCGUACUuu-GUgcACgGgGGCUGCa -3'
miRNA:   3'- -GCGCAUGAcguCAaaUGgCgCCGACG- -5'
29614 5' -53.7 NC_006151.1 + 78446 0.68 0.897069
Target:  5'- cCGCGUGCUGCgcgAGgcgACCGUcuucGGCgagGUg -3'
miRNA:   3'- -GCGCAUGACG---UCaaaUGGCG----CCGa--CG- -5'
29614 5' -53.7 NC_006151.1 + 64931 0.68 0.897069
Target:  5'- gGCGUACUcGCGcGUcagcgccugGCCGC-GCUGCg -3'
miRNA:   3'- gCGCAUGA-CGU-CAaa-------UGGCGcCGACG- -5'
29614 5' -53.7 NC_006151.1 + 48891 0.68 0.897069
Target:  5'- aCGCGcgcCUGCGcuggccgagUACCGCGGCcGCu -3'
miRNA:   3'- -GCGCau-GACGUcaa------AUGGCGCCGaCG- -5'
29614 5' -53.7 NC_006151.1 + 5065 0.68 0.894393
Target:  5'- gGCGgaggaggccgaggGCcGCGGg--GCCGCGGCggGCg -3'
miRNA:   3'- gCGCa------------UGaCGUCaaaUGGCGCCGa-CG- -5'
29614 5' -53.7 NC_006151.1 + 61773 0.68 0.890308
Target:  5'- cCGUgGUGCUGCGGcgcgagGCCGgcCGGCUGg -3'
miRNA:   3'- -GCG-CAUGACGUCaaa---UGGC--GCCGACg -5'
29614 5' -53.7 NC_006151.1 + 2341 0.68 0.890308
Target:  5'- gGCGUcggGCUccaGCAGc--GCCGCGGC-GCa -3'
miRNA:   3'- gCGCA---UGA---CGUCaaaUGGCGCCGaCG- -5'
29614 5' -53.7 NC_006151.1 + 88388 0.68 0.883312
Target:  5'- gCGCGU-CcGCGGcgu-CCGCGGCcGCg -3'
miRNA:   3'- -GCGCAuGaCGUCaaauGGCGCCGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.