miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29614 5' -53.7 NC_006151.1 + 139310 0.66 0.946885
Target:  5'- gCGCGUGCUGCucg--ACCGU-GCUcGCc -3'
miRNA:   3'- -GCGCAUGACGucaaaUGGCGcCGA-CG- -5'
29614 5' -53.7 NC_006151.1 + 57458 0.66 0.946885
Target:  5'- cCGCGU-CgGCcaGGUgccgcGCCGCGGCgGCc -3'
miRNA:   3'- -GCGCAuGaCG--UCAaa---UGGCGCCGaCG- -5'
29614 5' -53.7 NC_006151.1 + 113800 0.67 0.942338
Target:  5'- aCGCGcUGCUGCGGc--GCCaCGGCcucGCg -3'
miRNA:   3'- -GCGC-AUGACGUCaaaUGGcGCCGa--CG- -5'
29614 5' -53.7 NC_006151.1 + 69132 0.67 0.942338
Target:  5'- cCGCGg---GCAGg--GCgCGCGGgUGCu -3'
miRNA:   3'- -GCGCaugaCGUCaaaUG-GCGCCgACG- -5'
29614 5' -53.7 NC_006151.1 + 64540 0.67 0.937547
Target:  5'- cCGCGU-CggggGCGGcgagGCCGUGGC-GCg -3'
miRNA:   3'- -GCGCAuGa---CGUCaaa-UGGCGCCGaCG- -5'
29614 5' -53.7 NC_006151.1 + 106774 0.67 0.937547
Target:  5'- gCGCGUGagcgcCUGgAccugGCCGCGGCgGCg -3'
miRNA:   3'- -GCGCAU-----GACgUcaaaUGGCGCCGaCG- -5'
29614 5' -53.7 NC_006151.1 + 72534 0.67 0.937054
Target:  5'- cCGUGUACa-CAGUUUAUauacacgCGCGGCcGCg -3'
miRNA:   3'- -GCGCAUGacGUCAAAUG-------GCGCCGaCG- -5'
29614 5' -53.7 NC_006151.1 + 4301 0.67 0.932507
Target:  5'- gGCGUccgccaGCUcGCGGggcacgcgGCCG-GGCUGCg -3'
miRNA:   3'- gCGCA------UGA-CGUCaaa-----UGGCgCCGACG- -5'
29614 5' -53.7 NC_006151.1 + 65702 0.67 0.932507
Target:  5'- gCGCGggaucagGUAGgggGCCucgcGCGGCUGCg -3'
miRNA:   3'- -GCGCauga---CGUCaaaUGG----CGCCGACG- -5'
29614 5' -53.7 NC_006151.1 + 104883 0.67 0.932507
Target:  5'- aCGCGccUGCUGCgcgaGGUgguggaCGCGGCgGCg -3'
miRNA:   3'- -GCGC--AUGACG----UCAaaug--GCGCCGaCG- -5'
29614 5' -53.7 NC_006151.1 + 128000 0.67 0.932507
Target:  5'- cCGCGUcGCggucGCGGg--GCgGCGGCgacgGCg -3'
miRNA:   3'- -GCGCA-UGa---CGUCaaaUGgCGCCGa---CG- -5'
29614 5' -53.7 NC_006151.1 + 71310 0.67 0.92722
Target:  5'- cCGCGUcuucACcgGCAagc-GCgGCGGCUGCg -3'
miRNA:   3'- -GCGCA----UGa-CGUcaaaUGgCGCCGACG- -5'
29614 5' -53.7 NC_006151.1 + 137042 0.67 0.92722
Target:  5'- aCGCGUGCcccccgGCgccGGUgUACCGCGuGgaGCu -3'
miRNA:   3'- -GCGCAUGa-----CG---UCAaAUGGCGC-CgaCG- -5'
29614 5' -53.7 NC_006151.1 + 7104 0.67 0.92722
Target:  5'- cCGCu--CUGCGGccaucuugGCCGCGGC-GCg -3'
miRNA:   3'- -GCGcauGACGUCaaa-----UGGCGCCGaCG- -5'
29614 5' -53.7 NC_006151.1 + 123871 0.67 0.926678
Target:  5'- aGCGcUGCUGCugcuGgcgcucGCCGCGGCcccgccgUGCg -3'
miRNA:   3'- gCGC-AUGACGu---Caaa---UGGCGCCG-------ACG- -5'
29614 5' -53.7 NC_006151.1 + 58424 0.67 0.921684
Target:  5'- gGCGUGCgGCAGccacGCCucgGUGGCgUGCg -3'
miRNA:   3'- gCGCAUGaCGUCaaa-UGG---CGCCG-ACG- -5'
29614 5' -53.7 NC_006151.1 + 119377 0.67 0.921684
Target:  5'- gGCGUGCgGCuucugcCCGCaGCUGCu -3'
miRNA:   3'- gCGCAUGaCGucaaauGGCGcCGACG- -5'
29614 5' -53.7 NC_006151.1 + 5309 0.67 0.9194
Target:  5'- cCGC-UGCUGCuGgagcugcugaaGCCGCGGCcGCg -3'
miRNA:   3'- -GCGcAUGACGuCaaa--------UGGCGCCGaCG- -5'
29614 5' -53.7 NC_006151.1 + 55063 0.67 0.915899
Target:  5'- gGCGaggACccgGCGGgcucgGCCGCGGC-GCg -3'
miRNA:   3'- gCGCa--UGa--CGUCaaa--UGGCGCCGaCG- -5'
29614 5' -53.7 NC_006151.1 + 71967 0.67 0.915899
Target:  5'- gGCGUugUcGCGGU--GCgGCGGggGCa -3'
miRNA:   3'- gCGCAugA-CGUCAaaUGgCGCCgaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.