miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29614 5' -53.7 NC_006151.1 + 121930 0.72 0.734487
Target:  5'- cCGCGUGCUGgGGgcgcugGCCGCcGCcgGCg -3'
miRNA:   3'- -GCGCAUGACgUCaaa---UGGCGcCGa-CG- -5'
29614 5' -53.7 NC_006151.1 + 82986 0.71 0.764001
Target:  5'- gCGCGU-CUGCGccgccacgGCCGCGGC-GCa -3'
miRNA:   3'- -GCGCAuGACGUcaaa----UGGCGCCGaCG- -5'
29614 5' -53.7 NC_006151.1 + 131120 0.71 0.773609
Target:  5'- cCGCG-GC-GCGGgagGCCGCGGCgccGCg -3'
miRNA:   3'- -GCGCaUGaCGUCaaaUGGCGCCGa--CG- -5'
29614 5' -53.7 NC_006151.1 + 141611 0.71 0.783085
Target:  5'- gGCGagGCUGCcgggaucgggcgGGUcgcUGCCGCGGCgGCg -3'
miRNA:   3'- gCGCa-UGACG------------UCAa--AUGGCGCCGaCG- -5'
29614 5' -53.7 NC_006151.1 + 137774 0.71 0.783085
Target:  5'- gCGCGUGCUcCAGcagGCCGU-GCUGCu -3'
miRNA:   3'- -GCGCAUGAcGUCaaaUGGCGcCGACG- -5'
29614 5' -53.7 NC_006151.1 + 127834 0.71 0.783085
Target:  5'- -aCGUACgugGCGGcg--UCGCGGCUGCg -3'
miRNA:   3'- gcGCAUGa--CGUCaaauGGCGCCGACG- -5'
29614 5' -53.7 NC_006151.1 + 24224 0.7 0.801605
Target:  5'- gCGCGUACUGC-GUgUACgGCuGGCgGUg -3'
miRNA:   3'- -GCGCAUGACGuCAaAUGgCG-CCGaCG- -5'
29614 5' -53.7 NC_006151.1 + 104130 0.7 0.81063
Target:  5'- gCGCG-ACgugGCGGccgACCGCGGCUa- -3'
miRNA:   3'- -GCGCaUGa--CGUCaaaUGGCGCCGAcg -5'
29614 5' -53.7 NC_006151.1 + 53359 0.7 0.819486
Target:  5'- cCGCGUACUGCGucGUgucguaCGCGGCg-- -3'
miRNA:   3'- -GCGCAUGACGU--CAaaug--GCGCCGacg -5'
29614 5' -53.7 NC_006151.1 + 85152 0.7 0.828166
Target:  5'- cCGCGUGCgGCAGggggccggcGCCGCgGGCgccGCc -3'
miRNA:   3'- -GCGCAUGaCGUCaaa------UGGCG-CCGa--CG- -5'
29614 5' -53.7 NC_006151.1 + 99067 0.7 0.828166
Target:  5'- gCGCGaGCUGCgcccGGgc-ACCGUGGCgcgGCg -3'
miRNA:   3'- -GCGCaUGACG----UCaaaUGGCGCCGa--CG- -5'
29614 5' -53.7 NC_006151.1 + 113030 0.7 0.83666
Target:  5'- aCGCGUGC-GCcGggUGCugCGCGGCgGCg -3'
miRNA:   3'- -GCGCAUGaCGuCaaAUG--GCGCCGaCG- -5'
29614 5' -53.7 NC_006151.1 + 47277 0.7 0.83666
Target:  5'- gGCGc---GCAGcgu-CCGCGGCUGCu -3'
miRNA:   3'- gCGCaugaCGUCaaauGGCGCCGACG- -5'
29614 5' -53.7 NC_006151.1 + 4795 0.7 0.83666
Target:  5'- cCGCG-GC-GCGGUagcggGCCGCGGCcugGCg -3'
miRNA:   3'- -GCGCaUGaCGUCAaa---UGGCGCCGa--CG- -5'
29614 5' -53.7 NC_006151.1 + 4513 0.7 0.840004
Target:  5'- cCGCGUGCgGCAGg--GCCcagagcggguccuggGCGGCcaugGCg -3'
miRNA:   3'- -GCGCAUGaCGUCaaaUGG---------------CGCCGa---CG- -5'
29614 5' -53.7 NC_006151.1 + 137869 0.69 0.84496
Target:  5'- aCGCGcACgggcGCAGc---CUGCGGCUGCc -3'
miRNA:   3'- -GCGCaUGa---CGUCaaauGGCGCCGACG- -5'
29614 5' -53.7 NC_006151.1 + 130869 0.69 0.84496
Target:  5'- gGCGggACcGCAGUggGCgGCGGCgGUg -3'
miRNA:   3'- gCGCa-UGaCGUCAaaUGgCGCCGaCG- -5'
29614 5' -53.7 NC_006151.1 + 71763 0.69 0.84496
Target:  5'- gCGCGUGgucCUGCGGca-GCgGCGGCggggGCu -3'
miRNA:   3'- -GCGCAU---GACGUCaaaUGgCGCCGa---CG- -5'
29614 5' -53.7 NC_006151.1 + 40565 0.69 0.84496
Target:  5'- aGCG-GCgGCGGcg-GCCGCGGCggaggGCu -3'
miRNA:   3'- gCGCaUGaCGUCaaaUGGCGCCGa----CG- -5'
29614 5' -53.7 NC_006151.1 + 123248 0.69 0.85306
Target:  5'- gCGCGUuCUGCgAGgccGCCGCGcGCgcggGCa -3'
miRNA:   3'- -GCGCAuGACG-UCaaaUGGCGC-CGa---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.