miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29614 5' -53.7 NC_006151.1 + 47563 0.83 0.194013
Target:  5'- gCGCGaUACUGCAGUUUacugcaGCCGCGGUaaacUGCa -3'
miRNA:   3'- -GCGC-AUGACGUCAAA------UGGCGCCG----ACG- -5'
29614 5' -53.7 NC_006151.1 + 76482 0.77 0.450691
Target:  5'- aGCGUGCUGCAGUaggUGCCGa-GCaGCg -3'
miRNA:   3'- gCGCAUGACGUCAa--AUGGCgcCGaCG- -5'
29614 5' -53.7 NC_006151.1 + 29589 0.76 0.469577
Target:  5'- uCGCGgcgGCUGCG----GCCGCGGCgGCg -3'
miRNA:   3'- -GCGCa--UGACGUcaaaUGGCGCCGaCG- -5'
29614 5' -53.7 NC_006151.1 + 56263 0.76 0.512471
Target:  5'- uGCGUGCUGCAGauguuccuggagaccUgccCCGCGGCggagGCg -3'
miRNA:   3'- gCGCAUGACGUC---------------AaauGGCGCCGa---CG- -5'
29614 5' -53.7 NC_006151.1 + 61308 0.75 0.549744
Target:  5'- gCGCGUcgcGCUGCAGgUccagggagacgcccgGCCaGCGGCUGCg -3'
miRNA:   3'- -GCGCA---UGACGUCaAa--------------UGG-CGCCGACG- -5'
29614 5' -53.7 NC_006151.1 + 104583 0.74 0.577464
Target:  5'- gGaCGUGCUGCAGgccggcggcaGCCGCGGC-GCc -3'
miRNA:   3'- gC-GCAUGACGUCaaa-------UGGCGCCGaCG- -5'
29614 5' -53.7 NC_006151.1 + 96210 0.73 0.631554
Target:  5'- cCGCGUcGCcgugGCGGcg-GCCGCGGCgagGCg -3'
miRNA:   3'- -GCGCA-UGa---CGUCaaaUGGCGCCGa--CG- -5'
29614 5' -53.7 NC_006151.1 + 21146 0.73 0.641992
Target:  5'- aCGCcgGUACUGCGGaggcuacggACCG-GGCUGCg -3'
miRNA:   3'- -GCG--CAUGACGUCaaa------UGGCgCCGACG- -5'
29614 5' -53.7 NC_006151.1 + 128043 0.73 0.673224
Target:  5'- cCGCGgcaGCgGCGGca-GCgGCGGCUGCg -3'
miRNA:   3'- -GCGCa--UGaCGUCaaaUGgCGCCGACG- -5'
29614 5' -53.7 NC_006151.1 + 10209 0.73 0.673224
Target:  5'- gGCGgcgGCUGCAGag----GCGGCUGCg -3'
miRNA:   3'- gCGCa--UGACGUCaaauggCGCCGACG- -5'
29614 5' -53.7 NC_006151.1 + 47520 0.72 0.693885
Target:  5'- cCGCuaAUUGCAGUa-ACgCGCGGCUGCc -3'
miRNA:   3'- -GCGcaUGACGUCAaaUG-GCGCCGACG- -5'
29614 5' -53.7 NC_006151.1 + 120505 0.72 0.70414
Target:  5'- aCGC-UGCUGCAGcgcaaccagcUGCCggcGCGGCUGCu -3'
miRNA:   3'- -GCGcAUGACGUCaa--------AUGG---CGCCGACG- -5'
29614 5' -53.7 NC_006151.1 + 3247 0.72 0.70414
Target:  5'- gCGCGgcgGCggaGCGGggcGCCGCGGCgcgcgGCg -3'
miRNA:   3'- -GCGCa--UGa--CGUCaaaUGGCGCCGa----CG- -5'
29614 5' -53.7 NC_006151.1 + 65659 0.72 0.70414
Target:  5'- uCGCGUACUGCAGgucguCCGgcaCGGCgagGUc -3'
miRNA:   3'- -GCGCAUGACGUCaaau-GGC---GCCGa--CG- -5'
29614 5' -53.7 NC_006151.1 + 98361 0.72 0.714332
Target:  5'- gGCGUGC-GCGGgcucuggGCgCGCGcGCUGCg -3'
miRNA:   3'- gCGCAUGaCGUCaaa----UG-GCGC-CGACG- -5'
29614 5' -53.7 NC_006151.1 + 95184 0.72 0.714332
Target:  5'- uCGUGUGCaggcccUGCAGgccgaUGCCcagcgaGCGGCUGCg -3'
miRNA:   3'- -GCGCAUG------ACGUCaa---AUGG------CGCCGACG- -5'
29614 5' -53.7 NC_006151.1 + 54100 0.72 0.72445
Target:  5'- gGCGgccaugucgGCUGCGacg-GCgGCGGCUGCg -3'
miRNA:   3'- gCGCa--------UGACGUcaaaUGgCGCCGACG- -5'
29614 5' -53.7 NC_006151.1 + 81521 0.72 0.72445
Target:  5'- cCGCGUgaGCU-CGGcg-GCCGCGGCgGCg -3'
miRNA:   3'- -GCGCA--UGAcGUCaaaUGGCGCCGaCG- -5'
29614 5' -53.7 NC_006151.1 + 103981 0.72 0.72445
Target:  5'- gGCGaGCUGgAGgcgGCCGUGGCgGCc -3'
miRNA:   3'- gCGCaUGACgUCaaaUGGCGCCGaCG- -5'
29614 5' -53.7 NC_006151.1 + 103794 0.72 0.72747
Target:  5'- gGCGgcGCUGCAGgccgcgcugucggcgGCCGUGGCgGCg -3'
miRNA:   3'- gCGCa-UGACGUCaaa------------UGGCGCCGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.