miRNA display CGI


Results 1 - 20 of 120 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29614 5' -53.7 NC_006151.1 + 2341 0.68 0.890308
Target:  5'- gGCGUcggGCUccaGCAGc--GCCGCGGC-GCa -3'
miRNA:   3'- gCGCA---UGA---CGUCaaaUGGCGCCGaCG- -5'
29614 5' -53.7 NC_006151.1 + 2588 0.68 0.883312
Target:  5'- aCGCGcug-GCGGUagGCgCGCGGCgGCa -3'
miRNA:   3'- -GCGCaugaCGUCAaaUG-GCGCCGaCG- -5'
29614 5' -53.7 NC_006151.1 + 3067 0.67 0.915899
Target:  5'- gGCGUGCagagGCGGUggGCgaagGCGGCgaGCa -3'
miRNA:   3'- gCGCAUGa---CGUCAaaUGg---CGCCGa-CG- -5'
29614 5' -53.7 NC_006151.1 + 3247 0.72 0.70414
Target:  5'- gCGCGgcgGCggaGCGGggcGCCGCGGCgcgcgGCg -3'
miRNA:   3'- -GCGCa--UGa--CGUCaaaUGGCGCCGa----CG- -5'
29614 5' -53.7 NC_006151.1 + 4301 0.67 0.932507
Target:  5'- gGCGUccgccaGCUcGCGGggcacgcgGCCG-GGCUGCg -3'
miRNA:   3'- gCGCA------UGA-CGUCaaa-----UGGCgCCGACG- -5'
29614 5' -53.7 NC_006151.1 + 4513 0.7 0.840004
Target:  5'- cCGCGUGCgGCAGg--GCCcagagcggguccuggGCGGCcaugGCg -3'
miRNA:   3'- -GCGCAUGaCGUCaaaUGG---------------CGCCGa---CG- -5'
29614 5' -53.7 NC_006151.1 + 4795 0.7 0.83666
Target:  5'- cCGCG-GC-GCGGUagcggGCCGCGGCcugGCg -3'
miRNA:   3'- -GCGCaUGaCGUCAaa---UGGCGCCGa--CG- -5'
29614 5' -53.7 NC_006151.1 + 5065 0.68 0.894393
Target:  5'- gGCGgaggaggccgaggGCcGCGGg--GCCGCGGCggGCg -3'
miRNA:   3'- gCGCa------------UGaCGUCaaaUGGCGCCGa-CG- -5'
29614 5' -53.7 NC_006151.1 + 5309 0.67 0.9194
Target:  5'- cCGC-UGCUGCuGgagcugcugaaGCCGCGGCcGCg -3'
miRNA:   3'- -GCGcAUGACGuCaaa--------UGGCGCCGaCG- -5'
29614 5' -53.7 NC_006151.1 + 6124 0.66 0.951188
Target:  5'- gGCGgcCUcGUGGcuccgGCCGCGGCcGCg -3'
miRNA:   3'- gCGCauGA-CGUCaaa--UGGCGCCGaCG- -5'
29614 5' -53.7 NC_006151.1 + 7104 0.67 0.92722
Target:  5'- cCGCu--CUGCGGccaucuugGCCGCGGC-GCg -3'
miRNA:   3'- -GCGcauGACGUCaaa-----UGGCGCCGaCG- -5'
29614 5' -53.7 NC_006151.1 + 9469 0.66 0.959079
Target:  5'- cCGCGUccGCUuCGGccccCCGCGGCcGCg -3'
miRNA:   3'- -GCGCA--UGAcGUCaaauGGCGCCGaCG- -5'
29614 5' -53.7 NC_006151.1 + 10013 0.67 0.915899
Target:  5'- aGCGgcgGCgGCGGUc-GCCGCGGCc-- -3'
miRNA:   3'- gCGCa--UGaCGUCAaaUGGCGCCGacg -5'
29614 5' -53.7 NC_006151.1 + 10209 0.73 0.673224
Target:  5'- gGCGgcgGCUGCAGag----GCGGCUGCg -3'
miRNA:   3'- gCGCa--UGACGUCaaauggCGCCGACG- -5'
29614 5' -53.7 NC_006151.1 + 18977 0.68 0.909867
Target:  5'- aGCGgGCUGCacgAGgcgUACgCGCGGC-GCg -3'
miRNA:   3'- gCGCaUGACG---UCaa-AUG-GCGCCGaCG- -5'
29614 5' -53.7 NC_006151.1 + 19106 0.69 0.868628
Target:  5'- aCGUaGUACaGCAGgc-ACCGCGGggGCg -3'
miRNA:   3'- -GCG-CAUGaCGUCaaaUGGCGCCgaCG- -5'
29614 5' -53.7 NC_006151.1 + 21146 0.73 0.641992
Target:  5'- aCGCcgGUACUGCGGaggcuacggACCG-GGCUGCg -3'
miRNA:   3'- -GCG--CAUGACGUCaaa------UGGCgCCGACG- -5'
29614 5' -53.7 NC_006151.1 + 21327 0.69 0.860951
Target:  5'- aCGCccgGCgcgGCGGggguCCGCGGCUGg -3'
miRNA:   3'- -GCGca-UGa--CGUCaaauGGCGCCGACg -5'
29614 5' -53.7 NC_006151.1 + 21599 0.69 0.868628
Target:  5'- gGCGUACggcguggcgGCGGcgUAggcCCGCGGgaGCg -3'
miRNA:   3'- gCGCAUGa--------CGUCaaAU---GGCGCCgaCG- -5'
29614 5' -53.7 NC_006151.1 + 24224 0.7 0.801605
Target:  5'- gCGCGUACUGC-GUgUACgGCuGGCgGUg -3'
miRNA:   3'- -GCGCAUGACGuCAaAUGgCG-CCGaCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.