miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29614 5' -53.7 NC_006151.1 + 141611 0.71 0.783085
Target:  5'- gGCGagGCUGCcgggaucgggcgGGUcgcUGCCGCGGCgGCg -3'
miRNA:   3'- gCGCa-UGACG------------UCAa--AUGGCGCCGaCG- -5'
29614 5' -53.7 NC_006151.1 + 139310 0.66 0.946885
Target:  5'- gCGCGUGCUGCucg--ACCGU-GCUcGCc -3'
miRNA:   3'- -GCGCAUGACGucaaaUGGCGcCGA-CG- -5'
29614 5' -53.7 NC_006151.1 + 137869 0.69 0.84496
Target:  5'- aCGCGcACgggcGCAGc---CUGCGGCUGCc -3'
miRNA:   3'- -GCGCaUGa---CGUCaaauGGCGCCGACG- -5'
29614 5' -53.7 NC_006151.1 + 137774 0.71 0.783085
Target:  5'- gCGCGUGCUcCAGcagGCCGU-GCUGCu -3'
miRNA:   3'- -GCGCAUGAcGUCaaaUGGCGcCGACG- -5'
29614 5' -53.7 NC_006151.1 + 137042 0.67 0.92722
Target:  5'- aCGCGUGCcccccgGCgccGGUgUACCGCGuGgaGCu -3'
miRNA:   3'- -GCGCAUGa-----CG---UCAaAUGGCGC-CgaCG- -5'
29614 5' -53.7 NC_006151.1 + 136409 0.66 0.946885
Target:  5'- aGCGgcUACgcGCGGggccCCGCGGCgGCg -3'
miRNA:   3'- gCGC--AUGa-CGUCaaauGGCGCCGaCG- -5'
29614 5' -53.7 NC_006151.1 + 135668 0.66 0.962676
Target:  5'- cCGCGUcCUGUAcgccACgGaCGGCUGCg -3'
miRNA:   3'- -GCGCAuGACGUcaaaUGgC-GCCGACG- -5'
29614 5' -53.7 NC_006151.1 + 133331 0.66 0.959079
Target:  5'- gGCGcGCcggGCGGccgguuCCGCGGCgGCg -3'
miRNA:   3'- gCGCaUGa--CGUCaaau--GGCGCCGaCG- -5'
29614 5' -53.7 NC_006151.1 + 131757 0.68 0.883312
Target:  5'- gGCG-ACcgucGCGGUcgcgACCGCGGCcGCg -3'
miRNA:   3'- gCGCaUGa---CGUCAaa--UGGCGCCGaCG- -5'
29614 5' -53.7 NC_006151.1 + 131120 0.71 0.773609
Target:  5'- cCGCG-GC-GCGGgagGCCGCGGCgccGCg -3'
miRNA:   3'- -GCGCaUGaCGUCaaaUGGCGCCGa--CG- -5'
29614 5' -53.7 NC_006151.1 + 130869 0.69 0.84496
Target:  5'- gGCGggACcGCAGUggGCgGCGGCgGUg -3'
miRNA:   3'- gCGCa-UGaCGUCAaaUGgCGCCGaCG- -5'
29614 5' -53.7 NC_006151.1 + 130465 0.68 0.909867
Target:  5'- gGCGUGgUGCAGggcgauggccUGCCGCaGCgcgcgGCg -3'
miRNA:   3'- gCGCAUgACGUCaa--------AUGGCGcCGa----CG- -5'
29614 5' -53.7 NC_006151.1 + 128043 0.73 0.673224
Target:  5'- cCGCGgcaGCgGCGGca-GCgGCGGCUGCg -3'
miRNA:   3'- -GCGCa--UGaCGUCaaaUGgCGCCGACG- -5'
29614 5' -53.7 NC_006151.1 + 128000 0.67 0.932507
Target:  5'- cCGCGUcGCggucGCGGg--GCgGCGGCgacgGCg -3'
miRNA:   3'- -GCGCA-UGa---CGUCaaaUGgCGCCGa---CG- -5'
29614 5' -53.7 NC_006151.1 + 127834 0.71 0.783085
Target:  5'- -aCGUACgugGCGGcg--UCGCGGCUGCg -3'
miRNA:   3'- gcGCAUGa--CGUCaaauGGCGCCGACG- -5'
29614 5' -53.7 NC_006151.1 + 127380 0.66 0.959079
Target:  5'- cCGCGggggugGCGGgg-GCCGCGGCc-- -3'
miRNA:   3'- -GCGCauga--CGUCaaaUGGCGCCGacg -5'
29614 5' -53.7 NC_006151.1 + 123871 0.67 0.926678
Target:  5'- aGCGcUGCUGCugcuGgcgcucGCCGCGGCcccgccgUGCg -3'
miRNA:   3'- gCGC-AUGACGu---Caaa---UGGCGCCG-------ACG- -5'
29614 5' -53.7 NC_006151.1 + 123248 0.69 0.85306
Target:  5'- gCGCGUuCUGCgAGgccGCCGCGcGCgcggGCa -3'
miRNA:   3'- -GCGCAuGACG-UCaaaUGGCGC-CGa---CG- -5'
29614 5' -53.7 NC_006151.1 + 123036 0.69 0.85306
Target:  5'- gGCGUGg-GCGGaccugccgGCCGCGGCgcUGCg -3'
miRNA:   3'- gCGCAUgaCGUCaaa-----UGGCGCCG--ACG- -5'
29614 5' -53.7 NC_006151.1 + 121930 0.72 0.734487
Target:  5'- cCGCGUGCUGgGGgcgcugGCCGCcGCcgGCg -3'
miRNA:   3'- -GCGCAUGACgUCaaa---UGGCGcCGa-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.