miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29614 5' -53.7 NC_006151.1 + 29589 0.76 0.469577
Target:  5'- uCGCGgcgGCUGCG----GCCGCGGCgGCg -3'
miRNA:   3'- -GCGCa--UGACGUcaaaUGGCGCCGaCG- -5'
29614 5' -53.7 NC_006151.1 + 39901 0.66 0.951188
Target:  5'- gCGCGccuuCUGC-----GCCGCGgGCUGCu -3'
miRNA:   3'- -GCGCau--GACGucaaaUGGCGC-CGACG- -5'
29614 5' -53.7 NC_006151.1 + 40565 0.69 0.84496
Target:  5'- aGCG-GCgGCGGcg-GCCGCGGCggaggGCu -3'
miRNA:   3'- gCGCaUGaCGUCaaaUGGCGCCGa----CG- -5'
29614 5' -53.7 NC_006151.1 + 47277 0.7 0.83666
Target:  5'- gGCGc---GCAGcgu-CCGCGGCUGCu -3'
miRNA:   3'- gCGCaugaCGUCaaauGGCGCCGACG- -5'
29614 5' -53.7 NC_006151.1 + 47520 0.72 0.693885
Target:  5'- cCGCuaAUUGCAGUa-ACgCGCGGCUGCc -3'
miRNA:   3'- -GCGcaUGACGUCAaaUG-GCGCCGACG- -5'
29614 5' -53.7 NC_006151.1 + 47563 0.83 0.194013
Target:  5'- gCGCGaUACUGCAGUUUacugcaGCCGCGGUaaacUGCa -3'
miRNA:   3'- -GCGC-AUGACGUCAAA------UGGCGCCG----ACG- -5'
29614 5' -53.7 NC_006151.1 + 48114 0.69 0.876083
Target:  5'- gGCgGUGCUGguGUUUuuuuCgGCGGC-GCu -3'
miRNA:   3'- gCG-CAUGACguCAAAu---GgCGCCGaCG- -5'
29614 5' -53.7 NC_006151.1 + 48891 0.68 0.897069
Target:  5'- aCGCGcgcCUGCGcuggccgagUACCGCGGCcGCu -3'
miRNA:   3'- -GCGCau-GACGUcaa------AUGGCGCCGaCG- -5'
29614 5' -53.7 NC_006151.1 + 49173 0.66 0.955251
Target:  5'- gGCGcGCcGCGGggUGCUGCuGCUGa -3'
miRNA:   3'- gCGCaUGaCGUCaaAUGGCGcCGACg -5'
29614 5' -53.7 NC_006151.1 + 53359 0.7 0.819486
Target:  5'- cCGCGUACUGCGucGUgucguaCGCGGCg-- -3'
miRNA:   3'- -GCGCAUGACGU--CAaaug--GCGCCGacg -5'
29614 5' -53.7 NC_006151.1 + 53473 0.66 0.955251
Target:  5'- gCGCGaACgccgGCAGcgaGCCGUGGCacGCg -3'
miRNA:   3'- -GCGCaUGa---CGUCaaaUGGCGCCGa-CG- -5'
29614 5' -53.7 NC_006151.1 + 53674 0.69 0.860951
Target:  5'- aCGCGUaGCUGUAGc--GCC-CGaGCUGCg -3'
miRNA:   3'- -GCGCA-UGACGUCaaaUGGcGC-CGACG- -5'
29614 5' -53.7 NC_006151.1 + 54100 0.72 0.72445
Target:  5'- gGCGgccaugucgGCUGCGacg-GCgGCGGCUGCg -3'
miRNA:   3'- gCGCa--------UGACGUcaaaUGgCGCCGACG- -5'
29614 5' -53.7 NC_006151.1 + 54918 0.66 0.962676
Target:  5'- gCGCGUGCacggcgaggUGCuGgcgUGCCaCGcGCUGCg -3'
miRNA:   3'- -GCGCAUG---------ACGuCaa-AUGGcGC-CGACG- -5'
29614 5' -53.7 NC_006151.1 + 55063 0.67 0.915899
Target:  5'- gGCGaggACccgGCGGgcucgGCCGCGGC-GCg -3'
miRNA:   3'- gCGCa--UGa--CGUCaaa--UGGCGCCGaCG- -5'
29614 5' -53.7 NC_006151.1 + 56175 0.68 0.90359
Target:  5'- cCGCGUGCUcucGCuGgccgUGCCGCcGGUgGCg -3'
miRNA:   3'- -GCGCAUGA---CGuCaa--AUGGCG-CCGaCG- -5'
29614 5' -53.7 NC_006151.1 + 56263 0.76 0.512471
Target:  5'- uGCGUGCUGCAGauguuccuggagaccUgccCCGCGGCggagGCg -3'
miRNA:   3'- gCGCAUGACGUC---------------AaauGGCGCCGa---CG- -5'
29614 5' -53.7 NC_006151.1 + 57458 0.66 0.946885
Target:  5'- cCGCGU-CgGCcaGGUgccgcGCCGCGGCgGCc -3'
miRNA:   3'- -GCGCAuGaCG--UCAaa---UGGCGCCGaCG- -5'
29614 5' -53.7 NC_006151.1 + 57499 0.67 0.915899
Target:  5'- aCGCGcAC-GCGcucgGCCGCGGCgGCg -3'
miRNA:   3'- -GCGCaUGaCGUcaaaUGGCGCCGaCG- -5'
29614 5' -53.7 NC_006151.1 + 58424 0.67 0.921684
Target:  5'- gGCGUGCgGCAGccacGCCucgGUGGCgUGCg -3'
miRNA:   3'- gCGCAUGaCGUCaaa-UGG---CGCCG-ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.