miRNA display CGI


Results 41 - 60 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29615 3' -62.2 NC_006151.1 + 86537 0.66 0.618426
Target:  5'- -cGCCucGCCCGAG-GCCgCCGuGGcGCCg -3'
miRNA:   3'- guCGGc-UGGGCUCuCGG-GGCuCU-CGG- -5'
29615 3' -62.2 NC_006151.1 + 129192 0.66 0.618426
Target:  5'- aCGGCCG--CCGucAGCaccucCCCGGGGGCCg -3'
miRNA:   3'- -GUCGGCugGGCucUCG-----GGGCUCUCGG- -5'
29615 3' -62.2 NC_006151.1 + 38055 0.66 0.617446
Target:  5'- cCGGCCGcccucggGCCCGccuGCCUCGAGgaggugacGGCCg -3'
miRNA:   3'- -GUCGGC-------UGGGCucuCGGGGCUC--------UCGG- -5'
29615 3' -62.2 NC_006151.1 + 5996 0.66 0.608629
Target:  5'- gAGcCCGA-CCGGGGGaCCCGGcGGCCg -3'
miRNA:   3'- gUC-GGCUgGGCUCUCgGGGCUcUCGG- -5'
29615 3' -62.2 NC_006151.1 + 13185 0.66 0.608629
Target:  5'- gCGGCCGuCUCG-GGGCCCgCG-GcGCCg -3'
miRNA:   3'- -GUCGGCuGGGCuCUCGGG-GCuCuCGG- -5'
29615 3' -62.2 NC_006151.1 + 122215 0.66 0.608629
Target:  5'- gCAGCCGugCgCGGuGuGCUUCGAgGAGCUg -3'
miRNA:   3'- -GUCGGCugG-GCU-CuCGGGGCU-CUCGG- -5'
29615 3' -62.2 NC_006151.1 + 65987 0.66 0.608629
Target:  5'- -cGCCGGCCgCGAGcgcguccuccgcGGCgUCGAGcGCCu -3'
miRNA:   3'- guCGGCUGG-GCUC------------UCGgGGCUCuCGG- -5'
29615 3' -62.2 NC_006151.1 + 11452 0.66 0.608629
Target:  5'- --cCCG-CCCGcGuGCCCCcGGGGCCa -3'
miRNA:   3'- gucGGCuGGGCuCuCGGGGcUCUCGG- -5'
29615 3' -62.2 NC_006151.1 + 4905 0.66 0.60765
Target:  5'- gAGCCGGgccagggcucCCCGAGcggggugagcagcGGCCCgucggucggCGGGGGCCc -3'
miRNA:   3'- gUCGGCU----------GGGCUC-------------UCGGG---------GCUCUCGG- -5'
29615 3' -62.2 NC_006151.1 + 3833 0.67 0.598847
Target:  5'- uGGCgGgGCUgGAGGGCCC--GGAGCCg -3'
miRNA:   3'- gUCGgC-UGGgCUCUCGGGgcUCUCGG- -5'
29615 3' -62.2 NC_006151.1 + 11102 0.67 0.598847
Target:  5'- gGGCgcugCGACCCagaGAGAGCgCCGAGcuaaaAGCUa -3'
miRNA:   3'- gUCG----GCUGGG---CUCUCGgGGCUC-----UCGG- -5'
29615 3' -62.2 NC_006151.1 + 34635 0.67 0.598847
Target:  5'- gGGgCGACCgCGGGGGUCgCGGGAGg- -3'
miRNA:   3'- gUCgGCUGG-GCUCUCGGgGCUCUCgg -5'
29615 3' -62.2 NC_006151.1 + 78527 0.67 0.598847
Target:  5'- -cGCgGACCCGgcgGGGGCCUCGcc-GCCg -3'
miRNA:   3'- guCGgCUGGGC---UCUCGGGGCucuCGG- -5'
29615 3' -62.2 NC_006151.1 + 101589 0.67 0.598847
Target:  5'- -cGCCG-CCaGcGAGCUCCGGuGGGCCg -3'
miRNA:   3'- guCGGCuGGgCuCUCGGGGCU-CUCGG- -5'
29615 3' -62.2 NC_006151.1 + 2769 0.67 0.598847
Target:  5'- cCAGCaCGGCCgCGcGGAGCUCgCGGcacccGGGCCa -3'
miRNA:   3'- -GUCG-GCUGG-GC-UCUCGGG-GCU-----CUCGG- -5'
29615 3' -62.2 NC_006151.1 + 121345 0.67 0.598847
Target:  5'- -uGCgCGACCuCGAGGGCCagaCGGGcGCg -3'
miRNA:   3'- guCG-GCUGG-GCUCUCGGg--GCUCuCGg -5'
29615 3' -62.2 NC_006151.1 + 124674 0.67 0.598847
Target:  5'- aCGGCCuGCgCGAGggGGCCCacgGGGAGCa -3'
miRNA:   3'- -GUCGGcUGgGCUC--UCGGGg--CUCUCGg -5'
29615 3' -62.2 NC_006151.1 + 64189 0.67 0.589087
Target:  5'- -cGCCG-CCCGcGAucGCCCCGGGcaGGUCc -3'
miRNA:   3'- guCGGCuGGGCuCU--CGGGGCUC--UCGG- -5'
29615 3' -62.2 NC_006151.1 + 38128 0.67 0.589087
Target:  5'- gGGCCGGCCCGGccGAGCggCGGcaGGCCg -3'
miRNA:   3'- gUCGGCUGGGCU--CUCGggGCUc-UCGG- -5'
29615 3' -62.2 NC_006151.1 + 19488 0.67 0.589087
Target:  5'- -cGCCGAugcCCCGcuccGGGGCCUCGGGgacgcaggcgcGGCCc -3'
miRNA:   3'- guCGGCU---GGGC----UCUCGGGGCUC-----------UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.