miRNA display CGI


Results 41 - 60 of 93 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29615 5' -56.7 NC_006151.1 + 12400 0.68 0.790083
Target:  5'- -gAGCgGgaacuggAGAGGGgGCUGGGUGGGGu -3'
miRNA:   3'- agUCGgUa------UCUUCUgUGGCCCGCCCU- -5'
29615 5' -56.7 NC_006151.1 + 64856 0.68 0.790083
Target:  5'- -gGGCCucggcGGAGGGCcgcuGCCcGGCGGGAg -3'
miRNA:   3'- agUCGGua---UCUUCUG----UGGcCCGCCCU- -5'
29615 5' -56.7 NC_006151.1 + 30959 0.68 0.790083
Target:  5'- gCGGCCcgGGAG---AgCGGGCGGGGg -3'
miRNA:   3'- aGUCGGuaUCUUcugUgGCCCGCCCU- -5'
29615 5' -56.7 NC_006151.1 + 96582 0.68 0.780892
Target:  5'- --cGCCucgcGGcgcGAGGCGCCGGGCGcGGGc -3'
miRNA:   3'- aguCGGua--UC---UUCUGUGGCCCGC-CCU- -5'
29615 5' -56.7 NC_006151.1 + 29432 0.68 0.780892
Target:  5'- -uGGCCGcGGggGGCGgCGGGgagaGGGGa -3'
miRNA:   3'- agUCGGUaUCuuCUGUgGCCCg---CCCU- -5'
29615 5' -56.7 NC_006151.1 + 18556 0.68 0.780892
Target:  5'- aCGGCCGc-GAGGcCGCCcggcGGCGGGAg -3'
miRNA:   3'- aGUCGGUauCUUCuGUGGc---CCGCCCU- -5'
29615 5' -56.7 NC_006151.1 + 40517 0.68 0.762118
Target:  5'- cCGGCC--GGAGGugGCUGcGGCGGcGGc -3'
miRNA:   3'- aGUCGGuaUCUUCugUGGC-CCGCC-CU- -5'
29615 5' -56.7 NC_006151.1 + 132203 0.68 0.752553
Target:  5'- cCAcGCCGUGGuuGaacaGCACCGGGUGGa- -3'
miRNA:   3'- aGU-CGGUAUCuuC----UGUGGCCCGCCcu -5'
29615 5' -56.7 NC_006151.1 + 5123 0.68 0.752553
Target:  5'- cCGGCgCGggcgAGuGGGGCGCCGGGCcGGAc -3'
miRNA:   3'- aGUCG-GUa---UC-UUCUGUGGCCCGcCCU- -5'
29615 5' -56.7 NC_006151.1 + 139502 0.68 0.752553
Target:  5'- aCGGUCAUGGAGGACAgCGGcaacagcaGCGGc- -3'
miRNA:   3'- aGUCGGUAUCUUCUGUgGCC--------CGCCcu -5'
29615 5' -56.7 NC_006151.1 + 63506 0.68 0.752553
Target:  5'- -uGGCCAggUGGggGcGCGCgGGGCGGu- -3'
miRNA:   3'- agUCGGU--AUCuuC-UGUGgCCCGCCcu -5'
29615 5' -56.7 NC_006151.1 + 122693 0.68 0.742882
Target:  5'- gCGGCCGUGGAGcucGCGCucuuCGGGCGGcGGc -3'
miRNA:   3'- aGUCGGUAUCUUc--UGUG----GCCCGCC-CU- -5'
29615 5' -56.7 NC_006151.1 + 90374 0.68 0.742882
Target:  5'- gCAGCauc-GucGACGCCgcGGGCGGGAc -3'
miRNA:   3'- aGUCGguauCuuCUGUGG--CCCGCCCU- -5'
29615 5' -56.7 NC_006151.1 + 3098 0.69 0.733114
Target:  5'- gCAGCgCcgAGAGGcCGCCGcGGCGcGGGu -3'
miRNA:   3'- aGUCG-GuaUCUUCuGUGGC-CCGC-CCU- -5'
29615 5' -56.7 NC_006151.1 + 36556 0.69 0.733114
Target:  5'- aCAGCCAgcAGcGGugGCCGcagcgccggcacGGCGGGGg -3'
miRNA:   3'- aGUCGGUa-UCuUCugUGGC------------CCGCCCU- -5'
29615 5' -56.7 NC_006151.1 + 136220 0.69 0.733114
Target:  5'- uUCGGCCccgaggAGAAGACGCUGGuGCuGGc -3'
miRNA:   3'- -AGUCGGua----UCUUCUGUGGCC-CGcCCu -5'
29615 5' -56.7 NC_006151.1 + 113235 0.69 0.733114
Target:  5'- --cGCCGUGGAcGAgUACUGGGCGGa- -3'
miRNA:   3'- aguCGGUAUCUuCU-GUGGCCCGCCcu -5'
29615 5' -56.7 NC_006151.1 + 18674 0.69 0.732133
Target:  5'- cCGGCCGUAcGGguuccacGGGCGCgCGGGCGGc- -3'
miRNA:   3'- aGUCGGUAU-CU-------UCUGUG-GCCCGCCcu -5'
29615 5' -56.7 NC_006151.1 + 44133 0.69 0.732133
Target:  5'- gCGGCCAUcGAAacCACCGGGUugugaguGGGAa -3'
miRNA:   3'- aGUCGGUAuCUUcuGUGGCCCG-------CCCU- -5'
29615 5' -56.7 NC_006151.1 + 40053 0.69 0.723259
Target:  5'- --cGCCGUGG-AGACccACCGGcccGCGGGGg -3'
miRNA:   3'- aguCGGUAUCuUCUG--UGGCC---CGCCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.