miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29615 5' -56.7 NC_006151.1 + 20083 0.66 0.846779
Target:  5'- cUCGGCCAacgucaucuugggcUGGggGACgggcgccccggcgACgGGGCuGGGGg -3'
miRNA:   3'- -AGUCGGU--------------AUCuuCUG-------------UGgCCCG-CCCU- -5'
29615 5' -56.7 NC_006151.1 + 24275 0.67 0.841943
Target:  5'- --cGCUcc-GGAGGCGCguguCGGGCGGGAa -3'
miRNA:   3'- aguCGGuauCUUCUGUG----GCCCGCCCU- -5'
29615 5' -56.7 NC_006151.1 + 42774 0.67 0.841943
Target:  5'- cCGGgggGUGGGAcGugACUGGGCGGGGu -3'
miRNA:   3'- aGUCgg-UAUCUU-CugUGGCCCGCCCU- -5'
29615 5' -56.7 NC_006151.1 + 4883 0.67 0.841943
Target:  5'- gCGGCCGUcggccGGAGGGucggaGCCGGGCcaGGGc -3'
miRNA:   3'- aGUCGGUA-----UCUUCUg----UGGCCCG--CCCu -5'
29615 5' -56.7 NC_006151.1 + 10032 0.67 0.833733
Target:  5'- gCGGCCA-GGAGGAaaaACgGGggaGCGGGAg -3'
miRNA:   3'- aGUCGGUaUCUUCUg--UGgCC---CGCCCU- -5'
29615 5' -56.7 NC_006151.1 + 21494 0.67 0.833733
Target:  5'- gCGGCC--GGggGGCgcgggcgucACCGGGgCGGGc -3'
miRNA:   3'- aGUCGGuaUCuuCUG---------UGGCCC-GCCCu -5'
29615 5' -56.7 NC_006151.1 + 65109 0.67 0.833733
Target:  5'- gCAuGCCccaGGAGGACGCCcgucGGCGGGc -3'
miRNA:   3'- aGU-CGGua-UCUUCUGUGGc---CCGCCCu -5'
29615 5' -56.7 NC_006151.1 + 88107 0.67 0.833733
Target:  5'- -gGGCCcgucgAGGuccGACAgCGGGCGGGc -3'
miRNA:   3'- agUCGGua---UCUu--CUGUgGCCCGCCCu -5'
29615 5' -56.7 NC_006151.1 + 8673 0.67 0.833733
Target:  5'- cCGGUaccgacGGuGGugGCCGGGCGGGc -3'
miRNA:   3'- aGUCGgua---UCuUCugUGGCCCGCCCu -5'
29615 5' -56.7 NC_006151.1 + 122462 0.67 0.825338
Target:  5'- aCGGCgGcGGcGGGCGCCGaGGcCGGGGa -3'
miRNA:   3'- aGUCGgUaUCuUCUGUGGC-CC-GCCCU- -5'
29615 5' -56.7 NC_006151.1 + 137600 0.67 0.825338
Target:  5'- -gGGUCGggaucGggGGCG-CGGGCGGGGa -3'
miRNA:   3'- agUCGGUau---CuuCUGUgGCCCGCCCU- -5'
29615 5' -56.7 NC_006151.1 + 55036 0.67 0.825338
Target:  5'- cCGGCCGgcgccguggAGAAGAUGCUcGGCGaGGAc -3'
miRNA:   3'- aGUCGGUa--------UCUUCUGUGGcCCGC-CCU- -5'
29615 5' -56.7 NC_006151.1 + 122419 0.67 0.825338
Target:  5'- --cGCCGUGGAcGcCGCCGaGGCccGGGAg -3'
miRNA:   3'- aguCGGUAUCUuCuGUGGC-CCG--CCCU- -5'
29615 5' -56.7 NC_006151.1 + 135764 0.67 0.816768
Target:  5'- ----gCGUGGGAcGGCGCCGGGCuGGAc -3'
miRNA:   3'- agucgGUAUCUU-CUGUGGCCCGcCCU- -5'
29615 5' -56.7 NC_006151.1 + 48132 0.67 0.816768
Target:  5'- uUCGGCgGcgcUGGggGuuccugGCACCGGcgucGCGGGAa -3'
miRNA:   3'- -AGUCGgU---AUCuuC------UGUGGCC----CGCCCU- -5'
29615 5' -56.7 NC_006151.1 + 21312 0.67 0.80803
Target:  5'- -gAGCgGUGGcgcGAGACGCCcggcgcGGCGGGGg -3'
miRNA:   3'- agUCGgUAUC---UUCUGUGGc-----CCGCCCU- -5'
29615 5' -56.7 NC_006151.1 + 103536 0.67 0.80803
Target:  5'- cCGGCgCGcUGGuGGGCGCCGGGCagccgcucGGGGc -3'
miRNA:   3'- aGUCG-GU-AUCuUCUGUGGCCCG--------CCCU- -5'
29615 5' -56.7 NC_006151.1 + 105959 0.67 0.799132
Target:  5'- -gGGCuCAUGGAGacGGCgACCGuGGCGGGc -3'
miRNA:   3'- agUCG-GUAUCUU--CUG-UGGC-CCGCCCu -5'
29615 5' -56.7 NC_006151.1 + 25097 0.67 0.799132
Target:  5'- gUCGGCCAUuGuuGcugcgugcgaGCGCUGGGCGuGGAc -3'
miRNA:   3'- -AGUCGGUAuCuuC----------UGUGGCCCGC-CCU- -5'
29615 5' -56.7 NC_006151.1 + 12400 0.68 0.790083
Target:  5'- -gAGCgGgaacuggAGAGGGgGCUGGGUGGGGu -3'
miRNA:   3'- agUCGgUa------UCUUCUgUGGCCCGCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.