miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29615 5' -56.7 NC_006151.1 + 129436 0.7 0.661777
Target:  5'- cCGGCCccaaGUGGGcgGGGCGCacggccgUGGGCGGGAc -3'
miRNA:   3'- aGUCGG----UAUCU--UCUGUG-------GCCCGCCCU- -5'
29615 5' -56.7 NC_006151.1 + 5841 0.7 0.662798
Target:  5'- -aGGCCG-GGGAGGCugCGGaGgGGGAc -3'
miRNA:   3'- agUCGGUaUCUUCUGugGCC-CgCCCU- -5'
29615 5' -56.7 NC_006151.1 + 98004 0.7 0.662798
Target:  5'- -uGGCCgcGUAGgcGGCGCCGGccagguccGCGGGGu -3'
miRNA:   3'- agUCGG--UAUCuuCUGUGGCC--------CGCCCU- -5'
29615 5' -56.7 NC_006151.1 + 118418 0.7 0.672987
Target:  5'- --cGCCG-AGGAGACGaCGGGCGcGGAg -3'
miRNA:   3'- aguCGGUaUCUUCUGUgGCCCGC-CCU- -5'
29615 5' -56.7 NC_006151.1 + 30234 0.7 0.672987
Target:  5'- -gGGCCcgGGGuuGCGCC-GGCGGGAg -3'
miRNA:   3'- agUCGGuaUCUucUGUGGcCCGCCCU- -5'
29615 5' -56.7 NC_006151.1 + 130853 0.7 0.672987
Target:  5'- --cGCCGUcGgcGGCG-CGGGCGGGAc -3'
miRNA:   3'- aguCGGUAuCuuCUGUgGCCCGCCCU- -5'
29615 5' -56.7 NC_006151.1 + 101220 0.7 0.683144
Target:  5'- cCAGgCGUGGAcGGgGCCcGGCGGGGg -3'
miRNA:   3'- aGUCgGUAUCUuCUgUGGcCCGCCCU- -5'
29615 5' -56.7 NC_006151.1 + 13407 0.7 0.683144
Target:  5'- cCGGCCaAUGGggGA-GCCGGGCccgcguccccGGGGc -3'
miRNA:   3'- aGUCGG-UAUCuuCUgUGGCCCG----------CCCU- -5'
29615 5' -56.7 NC_006151.1 + 33202 0.69 0.692249
Target:  5'- cCGGCCGgcgcccccGGAgcacgcgGGGCGCCccggcGGGCGGGAg -3'
miRNA:   3'- aGUCGGUa-------UCU-------UCUGUGG-----CCCGCCCU- -5'
29615 5' -56.7 NC_006151.1 + 2428 0.69 0.693258
Target:  5'- gCGGCCGcAGGAGACGaagaCGGGCcgcagcGGGGc -3'
miRNA:   3'- aGUCGGUaUCUUCUGUg---GCCCG------CCCU- -5'
29615 5' -56.7 NC_006151.1 + 27227 0.69 0.703322
Target:  5'- --cGCCGUGGAcGcGCACCuccucggggucGGGCGGGGg -3'
miRNA:   3'- aguCGGUAUCUuC-UGUGG-----------CCCGCCCU- -5'
29615 5' -56.7 NC_006151.1 + 7736 0.69 0.703322
Target:  5'- cCGGaCCcgaaccgGGAAgcGACGCCgGGGCGGGAg -3'
miRNA:   3'- aGUC-GGua-----UCUU--CUGUGG-CCCGCCCU- -5'
29615 5' -56.7 NC_006151.1 + 3295 0.69 0.713325
Target:  5'- gCGGCCGggucGAAGgugaGCGCCGGGCgccagaguucgGGGAa -3'
miRNA:   3'- aGUCGGUau--CUUC----UGUGGCCCG-----------CCCU- -5'
29615 5' -56.7 NC_006151.1 + 40053 0.69 0.723259
Target:  5'- --cGCCGUGG-AGACccACCGGcccGCGGGGg -3'
miRNA:   3'- aguCGGUAUCuUCUG--UGGCC---CGCCCU- -5'
29615 5' -56.7 NC_006151.1 + 18674 0.69 0.732133
Target:  5'- cCGGCCGUAcGGguuccacGGGCGCgCGGGCGGc- -3'
miRNA:   3'- aGUCGGUAU-CU-------UCUGUG-GCCCGCCcu -5'
29615 5' -56.7 NC_006151.1 + 44133 0.69 0.732133
Target:  5'- gCGGCCAUcGAAacCACCGGGUugugaguGGGAa -3'
miRNA:   3'- aGUCGGUAuCUUcuGUGGCCCG-------CCCU- -5'
29615 5' -56.7 NC_006151.1 + 3098 0.69 0.733114
Target:  5'- gCAGCgCcgAGAGGcCGCCGcGGCGcGGGu -3'
miRNA:   3'- aGUCG-GuaUCUUCuGUGGC-CCGC-CCU- -5'
29615 5' -56.7 NC_006151.1 + 36556 0.69 0.733114
Target:  5'- aCAGCCAgcAGcGGugGCCGcagcgccggcacGGCGGGGg -3'
miRNA:   3'- aGUCGGUa-UCuUCugUGGC------------CCGCCCU- -5'
29615 5' -56.7 NC_006151.1 + 136220 0.69 0.733114
Target:  5'- uUCGGCCccgaggAGAAGACGCUGGuGCuGGc -3'
miRNA:   3'- -AGUCGGua----UCUUCUGUGGCC-CGcCCu -5'
29615 5' -56.7 NC_006151.1 + 113235 0.69 0.733114
Target:  5'- --cGCCGUGGAcGAgUACUGGGCGGa- -3'
miRNA:   3'- aguCGGUAUCUuCU-GUGGCCCGCCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.