miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29615 5' -56.7 NC_006151.1 + 30798 0.8 0.189724
Target:  5'- cCAGCCgAUGGccccgGGGGCACgCGGGCGGGAg -3'
miRNA:   3'- aGUCGG-UAUC-----UUCUGUG-GCCCGCCCU- -5'
29615 5' -56.7 NC_006151.1 + 117768 0.77 0.27994
Target:  5'- cCGGCCGaGGuauAGGCuCCGGGCGGGGc -3'
miRNA:   3'- aGUCGGUaUCu--UCUGuGGCCCGCCCU- -5'
29615 5' -56.7 NC_006151.1 + 13967 0.76 0.329059
Target:  5'- cCGGCCAUGGggGA-GCCGGGCccgcguccccGGGGc -3'
miRNA:   3'- aGUCGGUAUCuuCUgUGGCCCG----------CCCU- -5'
29615 5' -56.7 NC_006151.1 + 23424 0.76 0.336575
Target:  5'- cCGGCCGUGGggG-CGauGGGUGGGAg -3'
miRNA:   3'- aGUCGGUAUCuuCuGUggCCCGCCCU- -5'
29615 5' -56.7 NC_006151.1 + 104002 0.76 0.359865
Target:  5'- gCGGCCGUGGAGGcGCGCCGcgcGGCGGaGGu -3'
miRNA:   3'- aGUCGGUAUCUUC-UGUGGC---CCGCC-CU- -5'
29615 5' -56.7 NC_006151.1 + 27353 0.74 0.41844
Target:  5'- -gGGUCGUGGGccgGGGC-CCGGGCGGGu -3'
miRNA:   3'- agUCGGUAUCU---UCUGuGGCCCGCCCu -5'
29615 5' -56.7 NC_006151.1 + 103831 0.74 0.41844
Target:  5'- gCGGCCGUGG-AGAUGCuCGGGCGGc- -3'
miRNA:   3'- aGUCGGUAUCuUCUGUG-GCCCGCCcu -5'
29615 5' -56.7 NC_006151.1 + 58100 0.74 0.427271
Target:  5'- -gGGCCccaGGAAGGCGaagaCGGGCGGGGu -3'
miRNA:   3'- agUCGGua-UCUUCUGUg---GCCCGCCCU- -5'
29615 5' -56.7 NC_006151.1 + 31706 0.73 0.463659
Target:  5'- --cGCCAUu--GGGCGCCGGGCGGa- -3'
miRNA:   3'- aguCGGUAucuUCUGUGGCCCGCCcu -5'
29615 5' -56.7 NC_006151.1 + 67436 0.72 0.521083
Target:  5'- aUUAGCUcgGGGAuGGCG-CGGGCGGGGg -3'
miRNA:   3'- -AGUCGGuaUCUU-CUGUgGCCCGCCCU- -5'
29615 5' -56.7 NC_006151.1 + 58633 0.72 0.530933
Target:  5'- gCGGCuCGUAGAAGGCcagcGCCGGGaGGGc -3'
miRNA:   3'- aGUCG-GUAUCUUCUG----UGGCCCgCCCu -5'
29615 5' -56.7 NC_006151.1 + 45587 0.72 0.539855
Target:  5'- aCGGCCcgAGggGGCggggggagccccgACgGGGCGGGc -3'
miRNA:   3'- aGUCGGuaUCuuCUG-------------UGgCCCGCCCu -5'
29615 5' -56.7 NC_006151.1 + 135111 0.72 0.540849
Target:  5'- gCGGCgGUAGcgcgcGGGGCggGCUGGGCGGGGa -3'
miRNA:   3'- aGUCGgUAUC-----UUCUG--UGGCCCGCCCU- -5'
29615 5' -56.7 NC_006151.1 + 139632 0.72 0.560861
Target:  5'- -gGGCCAUcc--GGCGCCGGcGCGGGGg -3'
miRNA:   3'- agUCGGUAucuuCUGUGGCC-CGCCCU- -5'
29615 5' -56.7 NC_006151.1 + 3924 0.72 0.560861
Target:  5'- -gGGCCAgagcGggGGCagGCCGGGCGcGGGc -3'
miRNA:   3'- agUCGGUau--CuuCUG--UGGCCCGC-CCU- -5'
29615 5' -56.7 NC_006151.1 + 77922 0.71 0.601427
Target:  5'- aCGGCCGUGGuGGugAa-GGGCGGGc -3'
miRNA:   3'- aGUCGGUAUCuUCugUggCCCGCCCu -5'
29615 5' -56.7 NC_006151.1 + 72503 0.71 0.611643
Target:  5'- -gAGCgAaAGAAGACACugacgCGGGCGGGu -3'
miRNA:   3'- agUCGgUaUCUUCUGUG-----GCCCGCCCu -5'
29615 5' -56.7 NC_006151.1 + 59126 0.71 0.611643
Target:  5'- aCAGCUgccgGUGGguGGCGCCcgcGGGCGGGu -3'
miRNA:   3'- aGUCGG----UAUCuuCUGUGG---CCCGCCCu -5'
29615 5' -56.7 NC_006151.1 + 102680 0.7 0.642352
Target:  5'- --cGCCGUGGAcgcggGGGCGcCCGGcGCGGGc -3'
miRNA:   3'- aguCGGUAUCU-----UCUGU-GGCC-CGCCCu -5'
29615 5' -56.7 NC_006151.1 + 133317 0.7 0.652583
Target:  5'- gCGGcCCGUGucGAGGcGCGCCGGGCGGc- -3'
miRNA:   3'- aGUC-GGUAU--CUUC-UGUGGCCCGCCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.