miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29615 5' -56.7 NC_006151.1 + 1804 0.65 0.884906
Target:  5'- -gGGCCGgGGAggcAGGCGCCGGGgaggcaagcgccgcCGGGc -3'
miRNA:   3'- agUCGGUaUCU---UCUGUGGCCC--------------GCCCu -5'
29615 5' -56.7 NC_006151.1 + 2279 0.66 0.880003
Target:  5'- aCGGCCGgc-GGGGCGcCCGcGGCGGcGAc -3'
miRNA:   3'- aGUCGGUaucUUCUGU-GGC-CCGCC-CU- -5'
29615 5' -56.7 NC_006151.1 + 2428 0.69 0.693258
Target:  5'- gCGGCCGcAGGAGACGaagaCGGGCcgcagcGGGGc -3'
miRNA:   3'- aGUCGGUaUCUUCUGUg---GCCCG------CCCU- -5'
29615 5' -56.7 NC_006151.1 + 3098 0.69 0.733114
Target:  5'- gCAGCgCcgAGAGGcCGCCGcGGCGcGGGu -3'
miRNA:   3'- aGUCG-GuaUCUUCuGUGGC-CCGC-CCU- -5'
29615 5' -56.7 NC_006151.1 + 3295 0.69 0.713325
Target:  5'- gCGGCCGggucGAAGgugaGCGCCGGGCgccagaguucgGGGAa -3'
miRNA:   3'- aGUCGGUau--CUUC----UGUGGCCCG-----------CCCU- -5'
29615 5' -56.7 NC_006151.1 + 3924 0.72 0.560861
Target:  5'- -gGGCCAgagcGggGGCagGCCGGGCGcGGGc -3'
miRNA:   3'- agUCGGUau--CuuCUG--UGGCCCGC-CCU- -5'
29615 5' -56.7 NC_006151.1 + 4208 0.66 0.879294
Target:  5'- -gGGCCcgAGGgcggccgGGGCG-CGGGCGGGc -3'
miRNA:   3'- agUCGGuaUCU-------UCUGUgGCCCGCCCu -5'
29615 5' -56.7 NC_006151.1 + 4883 0.67 0.841943
Target:  5'- gCGGCCGUcggccGGAGGGucggaGCCGGGCcaGGGc -3'
miRNA:   3'- aGUCGGUA-----UCUUCUg----UGGCCCG--CCCu -5'
29615 5' -56.7 NC_006151.1 + 5031 0.66 0.857785
Target:  5'- -gGGCCGgggccGggGAgGCCGcGGCGGaGGa -3'
miRNA:   3'- agUCGGUau---CuuCUgUGGC-CCGCC-CU- -5'
29615 5' -56.7 NC_006151.1 + 5123 0.68 0.752553
Target:  5'- cCGGCgCGggcgAGuGGGGCGCCGGGCcGGAc -3'
miRNA:   3'- aGUCG-GUa---UC-UUCUGUGGCCCGcCCU- -5'
29615 5' -56.7 NC_006151.1 + 5841 0.7 0.662798
Target:  5'- -aGGCCG-GGGAGGCugCGGaGgGGGAc -3'
miRNA:   3'- agUCGGUaUCUUCUGugGCC-CgCCCU- -5'
29615 5' -56.7 NC_006151.1 + 7736 0.69 0.703322
Target:  5'- cCGGaCCcgaaccgGGAAgcGACGCCgGGGCGGGAg -3'
miRNA:   3'- aGUC-GGua-----UCUU--CUGUGG-CCCGCCCU- -5'
29615 5' -56.7 NC_006151.1 + 8594 0.66 0.880003
Target:  5'- -gGGCCGgugcgAGuauGGGgGCCGGuGCGGGu -3'
miRNA:   3'- agUCGGUa----UCu--UCUgUGGCC-CGCCCu -5'
29615 5' -56.7 NC_006151.1 + 8673 0.67 0.833733
Target:  5'- cCGGUaccgacGGuGGugGCCGGGCGGGc -3'
miRNA:   3'- aGUCGgua---UCuUCugUGGCCCGCCCu -5'
29615 5' -56.7 NC_006151.1 + 10032 0.67 0.833733
Target:  5'- gCGGCCA-GGAGGAaaaACgGGggaGCGGGAg -3'
miRNA:   3'- aGUCGGUaUCUUCUg--UGgCC---CGCCCU- -5'
29615 5' -56.7 NC_006151.1 + 12400 0.68 0.790083
Target:  5'- -gAGCgGgaacuggAGAGGGgGCUGGGUGGGGu -3'
miRNA:   3'- agUCGgUa------UCUUCUgUGGCCCGCCCU- -5'
29615 5' -56.7 NC_006151.1 + 13407 0.7 0.683144
Target:  5'- cCGGCCaAUGGggGA-GCCGGGCccgcguccccGGGGc -3'
miRNA:   3'- aGUCGG-UAUCuuCUgUGGCCCG----------CCCU- -5'
29615 5' -56.7 NC_006151.1 + 13967 0.76 0.329059
Target:  5'- cCGGCCAUGGggGA-GCCGGGCccgcguccccGGGGc -3'
miRNA:   3'- aGUCGGUAUCuuCUgUGGCCCG----------CCCU- -5'
29615 5' -56.7 NC_006151.1 + 18096 0.68 0.790083
Target:  5'- gCGGCCGgguUAG-AGACGCucguCGGGaCGGGGg -3'
miRNA:   3'- aGUCGGU---AUCuUCUGUG----GCCC-GCCCU- -5'
29615 5' -56.7 NC_006151.1 + 18556 0.68 0.780892
Target:  5'- aCGGCCGc-GAGGcCGCCcggcGGCGGGAg -3'
miRNA:   3'- aGUCGGUauCUUCuGUGGc---CCGCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.