Results 1 - 20 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29615 | 5' | -56.7 | NC_006151.1 | + | 30798 | 0.8 | 0.189724 |
Target: 5'- cCAGCCgAUGGccccgGGGGCACgCGGGCGGGAg -3' miRNA: 3'- aGUCGG-UAUC-----UUCUGUG-GCCCGCCCU- -5' |
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29615 | 5' | -56.7 | NC_006151.1 | + | 93547 | 0.66 | 0.865403 |
Target: 5'- aUCAgcGCCAUGGGaaAGucCGCCgcggGGGCGGGc -3' miRNA: 3'- -AGU--CGGUAUCU--UCu-GUGG----CCCGCCCu -5' |
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29615 | 5' | -56.7 | NC_006151.1 | + | 82354 | 0.66 | 0.863896 |
Target: 5'- --cGCCGUGGuguacgugcgccGGACGCCGGGCGc-- -3' miRNA: 3'- aguCGGUAUCu-----------UCUGUGGCCCGCccu -5' |
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29615 | 5' | -56.7 | NC_006151.1 | + | 71068 | 0.66 | 0.858556 |
Target: 5'- cCGGCCGUGGucuucuaccaccacGGCGCCgcGGGCGcGGGc -3' miRNA: 3'- aGUCGGUAUCuu------------CUGUGG--CCCGC-CCU- -5' |
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29615 | 5' | -56.7 | NC_006151.1 | + | 96836 | 0.66 | 0.857785 |
Target: 5'- --cGCCAaUGGggGAaa--GGGCGGGGa -3' miRNA: 3'- aguCGGU-AUCuuCUguggCCCGCCCU- -5' |
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29615 | 5' | -56.7 | NC_006151.1 | + | 33947 | 0.66 | 0.857785 |
Target: 5'- --cGCCcc-GggGGCuCgGGGCGGGAc -3' miRNA: 3'- aguCGGuauCuuCUGuGgCCCGCCCU- -5' |
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29615 | 5' | -56.7 | NC_006151.1 | + | 5031 | 0.66 | 0.857785 |
Target: 5'- -gGGCCGgggccGggGAgGCCGcGGCGGaGGa -3' miRNA: 3'- agUCGGUau---CuuCUgUGGC-CCGCC-CU- -5' |
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29615 | 5' | -56.7 | NC_006151.1 | + | 57824 | 0.66 | 0.857785 |
Target: 5'- cCAGCCAggccccgcGGAGGGCGCaCGGGUGc-- -3' miRNA: 3'- aGUCGGUa-------UCUUCUGUG-GCCCGCccu -5' |
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29615 | 5' | -56.7 | NC_006151.1 | + | 27432 | 0.66 | 0.849963 |
Target: 5'- cCGGuCCAUGGGcgcggcGGACGCggUGGGuCGGGGg -3' miRNA: 3'- aGUC-GGUAUCU------UCUGUG--GCCC-GCCCU- -5' |
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29615 | 5' | -56.7 | NC_006151.1 | + | 111667 | 0.66 | 0.865403 |
Target: 5'- gCGGCCAgGGggGcguCGgCGGGCcGGAa -3' miRNA: 3'- aGUCGGUaUCuuCu--GUgGCCCGcCCU- -5' |
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29615 | 5' | -56.7 | NC_006151.1 | + | 58194 | 0.66 | 0.87208 |
Target: 5'- cUCAcGCCGUGGGccaccAGGCagucgaaGCCGcGCGGGAc -3' miRNA: 3'- -AGU-CGGUAUCU-----UCUG-------UGGCcCGCCCU- -5' |
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29615 | 5' | -56.7 | NC_006151.1 | + | 78563 | 0.66 | 0.872811 |
Target: 5'- gCAcGCCcgGGAGGACGCggcgaCGGGCcuGGAg -3' miRNA: 3'- aGU-CGGuaUCUUCUGUG-----GCCCGc-CCU- -5' |
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29615 | 5' | -56.7 | NC_006151.1 | + | 134969 | 0.66 | 0.880003 |
Target: 5'- cUCGGCCAgccuccGGGCcuucUCGGGCGGGc -3' miRNA: 3'- -AGUCGGUaucu--UCUGu---GGCCCGCCCu -5' |
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29615 | 5' | -56.7 | NC_006151.1 | + | 8594 | 0.66 | 0.880003 |
Target: 5'- -gGGCCGgugcgAGuauGGGgGCCGGuGCGGGu -3' miRNA: 3'- agUCGGUa----UCu--UCUgUGGCC-CGCCCu -5' |
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29615 | 5' | -56.7 | NC_006151.1 | + | 2279 | 0.66 | 0.880003 |
Target: 5'- aCGGCCGgc-GGGGCGcCCGcGGCGGcGAc -3' miRNA: 3'- aGUCGGUaucUUCUGU-GGC-CCGCC-CU- -5' |
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29615 | 5' | -56.7 | NC_006151.1 | + | 4208 | 0.66 | 0.879294 |
Target: 5'- -gGGCCcgAGGgcggccgGGGCG-CGGGCGGGc -3' miRNA: 3'- agUCGGuaUCU-------UCUGUgGCCCGCCCu -5' |
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29615 | 5' | -56.7 | NC_006151.1 | + | 20455 | 0.66 | 0.877868 |
Target: 5'- -gGGCUcgGGGGuGGCGCCGGucccccgggggggcGCGGGGg -3' miRNA: 3'- agUCGGuaUCUU-CUGUGGCC--------------CGCCCU- -5' |
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29615 | 5' | -56.7 | NC_006151.1 | + | 117178 | 0.66 | 0.872811 |
Target: 5'- --cGCgGUAGAAGGgcCGCCGGG-GGGc -3' miRNA: 3'- aguCGgUAUCUUCU--GUGGCCCgCCCu -5' |
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29615 | 5' | -56.7 | NC_006151.1 | + | 109453 | 0.66 | 0.872811 |
Target: 5'- gCGGCCGgccccGACGCCGGaGCGGc- -3' miRNA: 3'- aGUCGGUaucuuCUGUGGCC-CGCCcu -5' |
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29615 | 5' | -56.7 | NC_006151.1 | + | 102419 | 0.66 | 0.872811 |
Target: 5'- gCGGCCcgcgaacGAGGccauGCACCGGGCGcuGGAc -3' miRNA: 3'- aGUCGGuau----CUUC----UGUGGCCCGC--CCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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