miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29615 5' -56.7 NC_006151.1 + 18674 0.69 0.732133
Target:  5'- cCGGCCGUAcGGguuccacGGGCGCgCGGGCGGc- -3'
miRNA:   3'- aGUCGGUAU-CU-------UCUGUG-GCCCGCCcu -5'
29615 5' -56.7 NC_006151.1 + 20083 0.66 0.846779
Target:  5'- cUCGGCCAacgucaucuugggcUGGggGACgggcgccccggcgACgGGGCuGGGGg -3'
miRNA:   3'- -AGUCGGU--------------AUCuuCUG-------------UGgCCCG-CCCU- -5'
29615 5' -56.7 NC_006151.1 + 20455 0.66 0.877868
Target:  5'- -gGGCUcgGGGGuGGCGCCGGucccccgggggggcGCGGGGg -3'
miRNA:   3'- agUCGGuaUCUU-CUGUGGCC--------------CGCCCU- -5'
29615 5' -56.7 NC_006151.1 + 21312 0.67 0.80803
Target:  5'- -gAGCgGUGGcgcGAGACGCCcggcgcGGCGGGGg -3'
miRNA:   3'- agUCGgUAUC---UUCUGUGGc-----CCGCCCU- -5'
29615 5' -56.7 NC_006151.1 + 21494 0.67 0.833733
Target:  5'- gCGGCC--GGggGGCgcgggcgucACCGGGgCGGGc -3'
miRNA:   3'- aGUCGGuaUCuuCUG---------UGGCCC-GCCCu -5'
29615 5' -56.7 NC_006151.1 + 23424 0.76 0.336575
Target:  5'- cCGGCCGUGGggG-CGauGGGUGGGAg -3'
miRNA:   3'- aGUCGGUAUCuuCuGUggCCCGCCCU- -5'
29615 5' -56.7 NC_006151.1 + 24275 0.67 0.841943
Target:  5'- --cGCUcc-GGAGGCGCguguCGGGCGGGAa -3'
miRNA:   3'- aguCGGuauCUUCUGUG----GCCCGCCCU- -5'
29615 5' -56.7 NC_006151.1 + 25097 0.67 0.799132
Target:  5'- gUCGGCCAUuGuuGcugcgugcgaGCGCUGGGCGuGGAc -3'
miRNA:   3'- -AGUCGGUAuCuuC----------UGUGGCCCGC-CCU- -5'
29615 5' -56.7 NC_006151.1 + 27227 0.69 0.703322
Target:  5'- --cGCCGUGGAcGcGCACCuccucggggucGGGCGGGGg -3'
miRNA:   3'- aguCGGUAUCUuC-UGUGG-----------CCCGCCCU- -5'
29615 5' -56.7 NC_006151.1 + 27353 0.74 0.41844
Target:  5'- -gGGUCGUGGGccgGGGC-CCGGGCGGGu -3'
miRNA:   3'- agUCGGUAUCU---UCUGuGGCCCGCCCu -5'
29615 5' -56.7 NC_006151.1 + 27432 0.66 0.849963
Target:  5'- cCGGuCCAUGGGcgcggcGGACGCggUGGGuCGGGGg -3'
miRNA:   3'- aGUC-GGUAUCU------UCUGUG--GCCC-GCCCU- -5'
29615 5' -56.7 NC_006151.1 + 29432 0.68 0.780892
Target:  5'- -uGGCCGcGGggGGCGgCGGGgagaGGGGa -3'
miRNA:   3'- agUCGGUaUCuuCUGUgGCCCg---CCCU- -5'
29615 5' -56.7 NC_006151.1 + 30234 0.7 0.672987
Target:  5'- -gGGCCcgGGGuuGCGCC-GGCGGGAg -3'
miRNA:   3'- agUCGGuaUCUucUGUGGcCCGCCCU- -5'
29615 5' -56.7 NC_006151.1 + 30798 0.8 0.189724
Target:  5'- cCAGCCgAUGGccccgGGGGCACgCGGGCGGGAg -3'
miRNA:   3'- aGUCGG-UAUC-----UUCUGUG-GCCCGCCCU- -5'
29615 5' -56.7 NC_006151.1 + 30959 0.68 0.790083
Target:  5'- gCGGCCcgGGAG---AgCGGGCGGGGg -3'
miRNA:   3'- aGUCGGuaUCUUcugUgGCCCGCCCU- -5'
29615 5' -56.7 NC_006151.1 + 31706 0.73 0.463659
Target:  5'- --cGCCAUu--GGGCGCCGGGCGGa- -3'
miRNA:   3'- aguCGGUAucuUCUGUGGCCCGCCcu -5'
29615 5' -56.7 NC_006151.1 + 33202 0.69 0.692249
Target:  5'- cCGGCCGgcgcccccGGAgcacgcgGGGCGCCccggcGGGCGGGAg -3'
miRNA:   3'- aGUCGGUa-------UCU-------UCUGUGG-----CCCGCCCU- -5'
29615 5' -56.7 NC_006151.1 + 33947 0.66 0.857785
Target:  5'- --cGCCcc-GggGGCuCgGGGCGGGAc -3'
miRNA:   3'- aguCGGuauCuuCUGuGgCCCGCCCU- -5'
29615 5' -56.7 NC_006151.1 + 36556 0.69 0.733114
Target:  5'- aCAGCCAgcAGcGGugGCCGcagcgccggcacGGCGGGGg -3'
miRNA:   3'- aGUCGGUa-UCuUCugUGGC------------CCGCCCU- -5'
29615 5' -56.7 NC_006151.1 + 40053 0.69 0.723259
Target:  5'- --cGCCGUGG-AGACccACCGGcccGCGGGGg -3'
miRNA:   3'- aguCGGUAUCuUCUG--UGGCC---CGCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.