miRNA display CGI


Results 41 - 60 of 220 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29616 3' -62.5 NC_006151.1 + 87439 0.66 0.572355
Target:  5'- cGUGC-CCgCCGCcGC-CGcGGCcGCCCc -3'
miRNA:   3'- aCACGuGG-GGCGaCGaGCuCCG-CGGG- -5'
29616 3' -62.5 NC_006151.1 + 136355 0.66 0.572355
Target:  5'- -cUGgACCCCGCgggGCugcucucguUCGcGGCGCUCu -3'
miRNA:   3'- acACgUGGGGCGa--CG---------AGCuCCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 116045 0.66 0.57138
Target:  5'- cGUGgAagCCCGagucggGCUCGAgcaccuuGGCGCCCu -3'
miRNA:   3'- aCACgUg-GGGCga----CGAGCU-------CCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 18918 0.67 0.562629
Target:  5'- gUGUGCACCUC-CUcGC-CGAaGGCGUCg -3'
miRNA:   3'- -ACACGUGGGGcGA-CGaGCU-CCGCGGg -5'
29616 3' -62.5 NC_006151.1 + 21466 0.67 0.562629
Target:  5'- cGUGguCCCgCGUcgccgGCUCGggcAGGCGgCCg -3'
miRNA:   3'- aCACguGGG-GCGa----CGAGC---UCCGCgGG- -5'
29616 3' -62.5 NC_006151.1 + 77457 0.67 0.562629
Target:  5'- --cGgGCUCaCGCUGCgCGGGaacGCGCCCg -3'
miRNA:   3'- acaCgUGGG-GCGACGaGCUC---CGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 90033 0.67 0.562629
Target:  5'- cGUGacggccaGCCCCaggGCgaUGC-CGAGGCGCgCCu -3'
miRNA:   3'- aCACg------UGGGG---CG--ACGaGCUCCGCG-GG- -5'
29616 3' -62.5 NC_006151.1 + 124992 0.67 0.562629
Target:  5'- cGUGCACCUgggCGaCUGCguccuccgCGAGGC-CUCg -3'
miRNA:   3'- aCACGUGGG---GC-GACGa-------GCUCCGcGGG- -5'
29616 3' -62.5 NC_006151.1 + 140029 0.67 0.562629
Target:  5'- -cUGCACCgC-CUGUUUGAGGUGCggCCg -3'
miRNA:   3'- acACGUGGgGcGACGAGCUCCGCG--GG- -5'
29616 3' -62.5 NC_006151.1 + 66530 0.67 0.562629
Target:  5'- --cGCGCgCCGC-GCUCuucgGGGGCGCgCg -3'
miRNA:   3'- acaCGUGgGGCGaCGAG----CUCCGCGgG- -5'
29616 3' -62.5 NC_006151.1 + 72640 0.67 0.562629
Target:  5'- --cGCgguCCCGCgGCUC-AGGCGCUCg -3'
miRNA:   3'- acaCGug-GGGCGaCGAGcUCCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 27173 0.67 0.562629
Target:  5'- --gGCGCCgCGUg--UCGGGGCGCCa -3'
miRNA:   3'- acaCGUGGgGCGacgAGCUCCGCGGg -5'
29616 3' -62.5 NC_006151.1 + 64622 0.67 0.562629
Target:  5'- --cGCGCCgCCgGCcGCggggCGcGGCGCCCc -3'
miRNA:   3'- acaCGUGG-GG-CGaCGa---GCuCCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 78950 0.67 0.562629
Target:  5'- --cGCGCgCCCGCccGcCUCGGucucGGUGCCCc -3'
miRNA:   3'- acaCGUG-GGGCGa-C-GAGCU----CCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 121829 0.67 0.560689
Target:  5'- aUGUGCcgcuACCUCGCgcggcggcugccGCUgGAGGCGCa- -3'
miRNA:   3'- -ACACG----UGGGGCGa-----------CGAgCUCCGCGgg -5'
29616 3' -62.5 NC_006151.1 + 20266 0.67 0.556814
Target:  5'- cGUGgGCCCCaGCaccaugGCUaucuucccggggcccCG-GGCGCCCg -3'
miRNA:   3'- aCACgUGGGG-CGa-----CGA---------------GCuCCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 136886 0.67 0.552948
Target:  5'- --aGCGCCUCGCgccccacgGCUgGGuGcGCGCCCc -3'
miRNA:   3'- acaCGUGGGGCGa-------CGAgCU-C-CGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 120805 0.67 0.552948
Target:  5'- --aGCGCgCCGC-GCgCGAGGUGCUg -3'
miRNA:   3'- acaCGUGgGGCGaCGaGCUCCGCGGg -5'
29616 3' -62.5 NC_006151.1 + 96266 0.67 0.552948
Target:  5'- --cGCAgCgCCCG-UGCUCGAGGCggGCCa -3'
miRNA:   3'- acaCGU-G-GGGCgACGAGCUCCG--CGGg -5'
29616 3' -62.5 NC_006151.1 + 85146 0.67 0.552948
Target:  5'- gGUGCACCgCGUgcgGCagGGggccGGCGCCg -3'
miRNA:   3'- aCACGUGGgGCGa--CGagCU----CCGCGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.