miRNA display CGI


Results 21 - 40 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29616 3' -62.5 NC_006151.1 + 39131 0.66 0.59192
Target:  5'- --gGCGCCCCGCgcccgGCcUGGGacccGCGCCg -3'
miRNA:   3'- acaCGUGGGGCGa----CGaGCUC----CGCGGg -5'
29616 3' -62.5 NC_006151.1 + 111135 0.66 0.59192
Target:  5'- cUGUGCGcgcCCCCGC-GCgCGcGGcCGCCUu -3'
miRNA:   3'- -ACACGU---GGGGCGaCGaGCuCC-GCGGG- -5'
29616 3' -62.5 NC_006151.1 + 125097 0.66 0.59192
Target:  5'- gGUGUACCUCGCccgcggggGCuUCGuGGUGgCCu -3'
miRNA:   3'- aCACGUGGGGCGa-------CG-AGCuCCGCgGG- -5'
29616 3' -62.5 NC_006151.1 + 138598 0.66 0.59192
Target:  5'- cGUGUACgCggCGCUGCcgcucggCGAGGaCGCCg -3'
miRNA:   3'- aCACGUGgG--GCGACGa------GCUCC-GCGGg -5'
29616 3' -62.5 NC_006151.1 + 2197 0.66 0.59192
Target:  5'- --gGC-CCCCGCggGC-CGGugggucuccacGGCGCCCc -3'
miRNA:   3'- acaCGuGGGGCGa-CGaGCU-----------CCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 56603 0.66 0.59192
Target:  5'- --cGCGCCCCgGCggcgcGCUCaccGCGCCCc -3'
miRNA:   3'- acaCGUGGGG-CGa----CGAGcucCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 109993 0.66 0.59192
Target:  5'- --cGCGagCCCGCcGag-GAGGCGCCCg -3'
miRNA:   3'- acaCGUg-GGGCGaCgagCUCCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 58690 0.66 0.590939
Target:  5'- cGUGCGCgCCGCgccacagcGC-CGGGuccgccaGCGCCCc -3'
miRNA:   3'- aCACGUGgGGCGa-------CGaGCUC-------CGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 82642 0.66 0.582121
Target:  5'- --gGgACCCCcCUGCggCGAGGgCgGCCCa -3'
miRNA:   3'- acaCgUGGGGcGACGa-GCUCC-G-CGGG- -5'
29616 3' -62.5 NC_006151.1 + 73954 0.66 0.582121
Target:  5'- cGUGCGCauguCCCGCgugGCcacCGuGGCcauGCCCg -3'
miRNA:   3'- aCACGUG----GGGCGa--CGa--GCuCCG---CGGG- -5'
29616 3' -62.5 NC_006151.1 + 83351 0.66 0.582121
Target:  5'- cGUGCuCCCCgGCgcgcGCgcgggcgCGcAGGCGCCg -3'
miRNA:   3'- aCACGuGGGG-CGa---CGa------GC-UCCGCGGg -5'
29616 3' -62.5 NC_006151.1 + 93745 0.66 0.582121
Target:  5'- -aUGCggGCCUCGUcgggGCgCGGGGCGUCCc -3'
miRNA:   3'- acACG--UGGGGCGa---CGaGCUCCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 100014 0.66 0.582121
Target:  5'- gGUgGCGCaCgCGC-GCaacgUCGAGGCGCUCg -3'
miRNA:   3'- aCA-CGUG-GgGCGaCG----AGCUCCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 69476 0.66 0.582121
Target:  5'- --gGCACCgucgCCGCcGcCUCGA-GCGCCCc -3'
miRNA:   3'- acaCGUGG----GGCGaC-GAGCUcCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 102377 0.66 0.581143
Target:  5'- --cGCGCCCguggccaagcuggCGCUGgUCGcGGCGCgCg -3'
miRNA:   3'- acaCGUGGG-------------GCGACgAGCuCCGCGgG- -5'
29616 3' -62.5 NC_006151.1 + 32317 0.66 0.57333
Target:  5'- gGUGUuuccuuCUCCGCguccccaucuccgagGCcCGAGGCGCCg -3'
miRNA:   3'- aCACGu-----GGGGCGa--------------CGaGCUCCGCGGg -5'
29616 3' -62.5 NC_006151.1 + 52759 0.66 0.572355
Target:  5'- --cGCGCCUCGCaGCgcagCGccgcGGCGUCCu -3'
miRNA:   3'- acaCGUGGGGCGaCGa---GCu---CCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 62436 0.66 0.572355
Target:  5'- cGUGCGCCugguCCGCgccUGCaUCGcccaccGCGCCCg -3'
miRNA:   3'- aCACGUGG----GGCG---ACG-AGCuc----CGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 87439 0.66 0.572355
Target:  5'- cGUGC-CCgCCGCcGC-CGcGGCcGCCCc -3'
miRNA:   3'- aCACGuGG-GGCGaCGaGCuCCG-CGGG- -5'
29616 3' -62.5 NC_006151.1 + 117145 0.66 0.572355
Target:  5'- gGUGCGCgaccaggcgCCCGCuguUGCUCGAGaCGCg- -3'
miRNA:   3'- aCACGUG---------GGGCG---ACGAGCUCcGCGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.