miRNA display CGI


Results 21 - 40 of 220 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29616 3' -62.5 NC_006151.1 + 68832 0.74 0.213922
Target:  5'- --cGCGCCggCGUgUGCUCGAGGCGCCg -3'
miRNA:   3'- acaCGUGGg-GCG-ACGAGCUCCGCGGg -5'
29616 3' -62.5 NC_006151.1 + 105038 0.73 0.229622
Target:  5'- --gGCGgCgCUGCUGCUCggcgccgucgagGAGGCGCCCg -3'
miRNA:   3'- acaCGUgG-GGCGACGAG------------CUCCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 26974 0.73 0.235069
Target:  5'- --cGCAgCgCGCUGCgcagCGGGGCGCUCu -3'
miRNA:   3'- acaCGUgGgGCGACGa---GCUCCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 72027 0.73 0.240622
Target:  5'- --gGCGCCCCGCg---CG-GGCGCCCc -3'
miRNA:   3'- acaCGUGGGGCGacgaGCuCCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 73105 0.73 0.246285
Target:  5'- cGUGCACCUCGCcGg-CGGcGCGCCCg -3'
miRNA:   3'- aCACGUGGGGCGaCgaGCUcCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 83748 0.73 0.252059
Target:  5'- aGUGCGCCaguaCGCcaucgGCUCGGGcacguacaGCGCCCc -3'
miRNA:   3'- aCACGUGGg---GCGa----CGAGCUC--------CGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 96579 0.73 0.257942
Target:  5'- --cGcCGCCUCGCgGCgCGAGGCGCCg -3'
miRNA:   3'- acaC-GUGGGGCGaCGaGCUCCGCGGg -5'
29616 3' -62.5 NC_006151.1 + 125205 0.73 0.257942
Target:  5'- cGUGgGCCCCGCgGCcccCGcGGCcGCCCg -3'
miRNA:   3'- aCACgUGGGGCGaCGa--GCuCCG-CGGG- -5'
29616 3' -62.5 NC_006151.1 + 114131 0.73 0.257942
Target:  5'- cGUGCGCCgCCGCcgagccgcgGCUCG-GGCGCa- -3'
miRNA:   3'- aCACGUGG-GGCGa--------CGAGCuCCGCGgg -5'
29616 3' -62.5 NC_006151.1 + 63701 0.72 0.270047
Target:  5'- cGUGCGCgUUCGCgGCgaCGuGGCGCCCg -3'
miRNA:   3'- aCACGUG-GGGCGaCGa-GCuCCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 64471 0.72 0.270047
Target:  5'- --cGCGCgCCGCcGCggCGGGGaCGCCCg -3'
miRNA:   3'- acaCGUGgGGCGaCGa-GCUCC-GCGGG- -5'
29616 3' -62.5 NC_006151.1 + 100937 0.72 0.270047
Target:  5'- cGUGC-CCCUGCUcGCgcaaaCGuGGGUGCCCg -3'
miRNA:   3'- aCACGuGGGGCGA-CGa----GC-UCCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 136632 0.72 0.270047
Target:  5'- --cGgACCCCGCgGCgcccgUGGGGCGCUCg -3'
miRNA:   3'- acaCgUGGGGCGaCGa----GCUCCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 83096 0.72 0.276268
Target:  5'- cGUGCACCUCGa-GC---GGGCGCCCg -3'
miRNA:   3'- aCACGUGGGGCgaCGagcUCCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 137267 0.72 0.281328
Target:  5'- --cGCGCCCgGUgcccgcgggcacGCUCGAGGCGgCCa -3'
miRNA:   3'- acaCGUGGGgCGa-----------CGAGCUCCGCgGG- -5'
29616 3' -62.5 NC_006151.1 + 56353 0.72 0.281965
Target:  5'- --cGCGCCCCGCcgGCgCGGaagcuacGGCGCCUg -3'
miRNA:   3'- acaCGUGGGGCGa-CGaGCU-------CCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 39732 0.72 0.282604
Target:  5'- --aGCGCUCCGCgcucggGCUCGGGGa-CCCg -3'
miRNA:   3'- acaCGUGGGGCGa-----CGAGCUCCgcGGG- -5'
29616 3' -62.5 NC_006151.1 + 66570 0.72 0.29298
Target:  5'- cGUGgACCCgGCgcucgcgcgcgcgGC-CGAGGCGCUCg -3'
miRNA:   3'- aCACgUGGGgCGa------------CGaGCUCCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 48939 0.72 0.294958
Target:  5'- gGUGCugCCCGC-GCgCGAGGacguguuCGCCUg -3'
miRNA:   3'- aCACGugGGGCGaCGaGCUCC-------GCGGG- -5'
29616 3' -62.5 NC_006151.1 + 77217 0.72 0.29562
Target:  5'- --cGCGCCgCCGCgugugUGCgccggGAGGCGCCCc -3'
miRNA:   3'- acaCGUGG-GGCG-----ACGag---CUCCGCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.