miRNA display CGI


Results 1 - 20 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29616 3' -62.5 NC_006151.1 + 117643 0.87 0.027744
Target:  5'- cGUGCACgCCgCGCUGCUcCGGGGCGUCCa -3'
miRNA:   3'- aCACGUG-GG-GCGACGA-GCUCCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 9047 0.82 0.064241
Target:  5'- --gGCGCCCCGCgUGCUCcgGGGGCGCCg -3'
miRNA:   3'- acaCGUGGGGCG-ACGAG--CUCCGCGGg -5'
29616 3' -62.5 NC_006151.1 + 100065 0.8 0.081058
Target:  5'- cGUGCGCgcggCCGCcgaggUGCUCGAGGCGCCg -3'
miRNA:   3'- aCACGUGg---GGCG-----ACGAGCUCCGCGGg -5'
29616 3' -62.5 NC_006151.1 + 63808 0.77 0.124875
Target:  5'- --aGCGCCUCGCcggGCccCGGGGCGCCCu -3'
miRNA:   3'- acaCGUGGGGCGa--CGa-GCUCCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 114423 0.77 0.130959
Target:  5'- cGUGCACCaCCGCgugcuggaccgccUGCUCGGGGCcuGCgCCg -3'
miRNA:   3'- aCACGUGG-GGCG-------------ACGAGCUCCG--CG-GG- -5'
29616 3' -62.5 NC_006151.1 + 33945 0.77 0.138001
Target:  5'- --cGCGCCCCGgggGCUCGGggcgggacgcGGCGCCCg -3'
miRNA:   3'- acaCGUGGGGCga-CGAGCU----------CCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 106559 0.77 0.141475
Target:  5'- aUGUGCAUCCCcccgcgGCUGCUCucGGCGCUg -3'
miRNA:   3'- -ACACGUGGGG------CGACGAGcuCCGCGGg -5'
29616 3' -62.5 NC_006151.1 + 33208 0.77 0.141475
Target:  5'- --gGCGcCCCCGgaGCacgCGGGGCGCCCc -3'
miRNA:   3'- acaCGU-GGGGCgaCGa--GCUCCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 14163 0.76 0.145029
Target:  5'- --cGCGCCCCGC---UCGAGGaCGCCCg -3'
miRNA:   3'- acaCGUGGGGCGacgAGCUCC-GCGGG- -5'
29616 3' -62.5 NC_006151.1 + 75849 0.76 0.148664
Target:  5'- --aGCACCCCGUcGa-CGGGGCGCCCc -3'
miRNA:   3'- acaCGUGGGGCGaCgaGCUCCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 40237 0.76 0.152382
Target:  5'- -cUGCugCuCCGCUGagCGGGGCGCCCc -3'
miRNA:   3'- acACGugG-GGCGACgaGCUCCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 7650 0.76 0.159679
Target:  5'- --cGCGCCUCGC-GCUCGgcgcgcgcuccgaGGGCGCCCc -3'
miRNA:   3'- acaCGUGGGGCGaCGAGC-------------UCCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 120341 0.76 0.164047
Target:  5'- --cGCGCgCCCGCguggccggGCUCGcGGGCGCCUa -3'
miRNA:   3'- acaCGUG-GGGCGa-------CGAGC-UCCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 109755 0.76 0.16811
Target:  5'- cGUG-GCCgCCGCcGUUgGAGGCGCCCg -3'
miRNA:   3'- aCACgUGG-GGCGaCGAgCUCCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 121187 0.75 0.172264
Target:  5'- cGUGCugCaCGC-GCUCGGGGCGCgCa -3'
miRNA:   3'- aCACGugGgGCGaCGAGCUCCGCGgG- -5'
29616 3' -62.5 NC_006151.1 + 70633 0.75 0.176509
Target:  5'- cGgcgGCGCCguggCCGC-GCgCGAGGCGCCCg -3'
miRNA:   3'- aCa--CGUGG----GGCGaCGaGCUCCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 72846 0.75 0.187983
Target:  5'- cUG-GUACuCCCGUUGCUCGucggcgaggcggcGGCGCCCg -3'
miRNA:   3'- -ACaCGUG-GGGCGACGAGCu------------CCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 142321 0.74 0.203974
Target:  5'- aUGgGgGCCCgCGC-GCUCGcGGCGCCCg -3'
miRNA:   3'- -ACaCgUGGG-GCGaCGAGCuCCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 104170 0.74 0.213922
Target:  5'- -cUGCGCCCCGCcGC-CGAGcGCGCgCu -3'
miRNA:   3'- acACGUGGGGCGaCGaGCUC-CGCGgG- -5'
29616 3' -62.5 NC_006151.1 + 2995 0.74 0.213922
Target:  5'- --aGCACCCCcugggcguugagGCgGCcgaugUCGGGGCGCCCg -3'
miRNA:   3'- acaCGUGGGG------------CGaCG-----AGCUCCGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.