miRNA display CGI


Results 1 - 20 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29616 3' -62.5 NC_006151.1 + 2197 0.66 0.59192
Target:  5'- --gGC-CCCCGCggGC-CGGugggucuccacGGCGCCCc -3'
miRNA:   3'- acaCGuGGGGCGa-CGaGCU-----------CCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 2290 0.71 0.330182
Target:  5'- --gGCG-CCCGCgGCggCGAcGGCGCCCg -3'
miRNA:   3'- acaCGUgGGGCGaCGa-GCU-CCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 2995 0.74 0.213922
Target:  5'- --aGCACCCCcugggcguugagGCgGCcgaugUCGGGGCGCCCg -3'
miRNA:   3'- acaCGUGGGG------------CGaCG-----AGCUCCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 3124 0.66 0.611593
Target:  5'- --gGguCCCagGCcggGCgCGGGGCGCCCu -3'
miRNA:   3'- acaCguGGGg-CGa--CGaGCUCCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 4706 0.7 0.375465
Target:  5'- --gGCgGCCCCGCUGUagaUGAGGCGCa- -3'
miRNA:   3'- acaCG-UGGGGCGACGa--GCUCCGCGgg -5'
29616 3' -62.5 NC_006151.1 + 5114 0.67 0.552948
Target:  5'- gGUgGCgGCCCgGCgcggGCgagUGGGGCGCCg -3'
miRNA:   3'- aCA-CG-UGGGgCGa---CGa--GCUCCGCGGg -5'
29616 3' -62.5 NC_006151.1 + 5238 0.68 0.486869
Target:  5'- --aGCGCCgCGCggcgGCggCGGGG-GCCCg -3'
miRNA:   3'- acaCGUGGgGCGa---CGa-GCUCCgCGGG- -5'
29616 3' -62.5 NC_006151.1 + 5389 0.69 0.442033
Target:  5'- cGgggGCGCCCCGCcGUccccggCGAGGCcgaGUCCg -3'
miRNA:   3'- aCa--CGUGGGGCGaCGa-----GCUCCG---CGGG- -5'
29616 3' -62.5 NC_006151.1 + 5622 0.68 0.459695
Target:  5'- aGgggGCGCCgCCGCcGC-CG-GGCGCCg -3'
miRNA:   3'- aCa--CGUGG-GGCGaCGaGCuCCGCGGg -5'
29616 3' -62.5 NC_006151.1 + 5693 0.68 0.468665
Target:  5'- cGUGCcggcgcugcgGCCaCCGCUGCUggcugugcUGGuGGCGCCg -3'
miRNA:   3'- aCACG----------UGG-GGCGACGA--------GCU-CCGCGGg -5'
29616 3' -62.5 NC_006151.1 + 7650 0.76 0.159679
Target:  5'- --cGCGCCUCGC-GCUCGgcgcgcgcuccgaGGGCGCCCc -3'
miRNA:   3'- acaCGUGGGGCGaCGAGC-------------UCCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 8347 0.66 0.621455
Target:  5'- --cGCGCCCgccggaCGCggagGCgCGAGGCcCCCg -3'
miRNA:   3'- acaCGUGGG------GCGa---CGaGCUCCGcGGG- -5'
29616 3' -62.5 NC_006151.1 + 9047 0.82 0.064241
Target:  5'- --gGCGCCCCGCgUGCUCcgGGGGCGCCg -3'
miRNA:   3'- acaCGUGGGGCG-ACGAG--CUCCGCGGg -5'
29616 3' -62.5 NC_006151.1 + 10621 0.67 0.543317
Target:  5'- --cGCGCgCCCGCgugcGCUCGugccGGCGCg- -3'
miRNA:   3'- acaCGUG-GGGCGa---CGAGCu---CCGCGgg -5'
29616 3' -62.5 NC_006151.1 + 11016 0.66 0.605683
Target:  5'- --cGCcCgCCCGCUcGCUCGccgggccggccggccGGGgGCCCg -3'
miRNA:   3'- acaCGuG-GGGCGA-CGAGC---------------UCCgCGGG- -5'
29616 3' -62.5 NC_006151.1 + 11992 0.68 0.459695
Target:  5'- ---cCGCgCCGCUGUcUGuGGCGCCCg -3'
miRNA:   3'- acacGUGgGGCGACGaGCuCCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 14163 0.76 0.145029
Target:  5'- --cGCGCCCCGC---UCGAGGaCGCCCg -3'
miRNA:   3'- acaCGUGGGGCGacgAGCUCC-GCGGG- -5'
29616 3' -62.5 NC_006151.1 + 15281 0.71 0.316009
Target:  5'- --aGCGCCCCGCUGCgc-AGcGCGCUg -3'
miRNA:   3'- acaCGUGGGGCGACGagcUC-CGCGGg -5'
29616 3' -62.5 NC_006151.1 + 17153 0.67 0.533742
Target:  5'- --aGCACCUgGUcGCagaggUCGGcGGCGCCCa -3'
miRNA:   3'- acaCGUGGGgCGaCG-----AGCU-CCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 17556 0.7 0.391464
Target:  5'- gGUGCGCCUCGCccacgaagGCgggGAuGCGCCCg -3'
miRNA:   3'- aCACGUGGGGCGa-------CGag-CUcCGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.