miRNA display CGI


Results 1 - 20 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29616 3' -62.5 NC_006151.1 + 142321 0.74 0.203974
Target:  5'- aUGgGgGCCCgCGC-GCUCGcGGCGCCCg -3'
miRNA:   3'- -ACaCgUGGG-GCGaCGAGCuCCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 140394 0.67 0.552948
Target:  5'- cGUGCugCCCGaggacCUgGGGGacuCGCCCg -3'
miRNA:   3'- aCACGugGGGCgac--GAgCUCC---GCGGG- -5'
29616 3' -62.5 NC_006151.1 + 140029 0.67 0.562629
Target:  5'- -cUGCACCgC-CUGUUUGAGGUGCggCCg -3'
miRNA:   3'- acACGUGGgGcGACGAGCUCCGCG--GG- -5'
29616 3' -62.5 NC_006151.1 + 139313 0.68 0.509143
Target:  5'- cGUGCugCUCGaccgUGCUCGccgggaucuuugccaAGGCGCUg -3'
miRNA:   3'- aCACGugGGGCg---ACGAGC---------------UCCGCGGg -5'
29616 3' -62.5 NC_006151.1 + 139139 0.7 0.367633
Target:  5'- cGUGCGCccucgucuuCCCGCUGUaCGcccGCGCCCu -3'
miRNA:   3'- aCACGUG---------GGGCGACGaGCuc-CGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 138598 0.66 0.59192
Target:  5'- cGUGUACgCggCGCUGCcgcucggCGAGGaCGCCg -3'
miRNA:   3'- aCACGUGgG--GCGACGa------GCUCC-GCGGg -5'
29616 3' -62.5 NC_006151.1 + 137267 0.72 0.281328
Target:  5'- --cGCGCCCgGUgcccgcgggcacGCUCGAGGCGgCCa -3'
miRNA:   3'- acaCGUGGGgCGa-----------CGAGCUCCGCgGG- -5'
29616 3' -62.5 NC_006151.1 + 136886 0.67 0.552948
Target:  5'- --aGCGCCUCGCgccccacgGCUgGGuGcGCGCCCc -3'
miRNA:   3'- acaCGUGGGGCGa-------CGAgCU-C-CGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 136632 0.72 0.270047
Target:  5'- --cGgACCCCGCgGCgcccgUGGGGCGCUCg -3'
miRNA:   3'- acaCgUGGGGCGaCGa----GCUCCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 136355 0.66 0.572355
Target:  5'- -cUGgACCCCGCgggGCugcucucguUCGcGGCGCUCu -3'
miRNA:   3'- acACgUGGGGCGa--CG---------AGCuCCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 136048 0.69 0.442033
Target:  5'- gGUGCGCCCgCGCaccgGCaacgcCGAGuacgcgccggaGCGCCCg -3'
miRNA:   3'- aCACGUGGG-GCGa---CGa----GCUC-----------CGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 134312 0.66 0.608637
Target:  5'- -uUGCACgCCGCUGCgccucgCGccGGGCaucgccacggacguGCCCu -3'
miRNA:   3'- acACGUGgGGCGACGa-----GC--UCCG--------------CGGG- -5'
29616 3' -62.5 NC_006151.1 + 133312 0.68 0.468665
Target:  5'- cGgggGCGgCCCGUg--UCGAGGCGCgCCg -3'
miRNA:   3'- aCa--CGUgGGGCGacgAGCUCCGCG-GG- -5'
29616 3' -62.5 NC_006151.1 + 132463 0.66 0.621455
Target:  5'- --aGCACCgCGCgGCa-GuAGGCGUCCa -3'
miRNA:   3'- acaCGUGGgGCGaCGagC-UCCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 130403 0.68 0.486869
Target:  5'- --aGCGCCUCGCccGCgagCGcGGGCGCgCCg -3'
miRNA:   3'- acaCGUGGGGCGa-CGa--GC-UCCGCG-GG- -5'
29616 3' -62.5 NC_006151.1 + 130322 0.7 0.383409
Target:  5'- --cGCGCCgCGC-GCUCGGGGaGCUCg -3'
miRNA:   3'- acaCGUGGgGCGaCGAGCUCCgCGGG- -5'
29616 3' -62.5 NC_006151.1 + 129614 0.7 0.367633
Target:  5'- cGUGCGCaCCaGCgGgUCGAGcGCGUCCa -3'
miRNA:   3'- aCACGUG-GGgCGaCgAGCUC-CGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 129242 0.69 0.416279
Target:  5'- gGUGCGCCCCucggugacGCgGCgCGAGGCaUCCu -3'
miRNA:   3'- aCACGUGGGG--------CGaCGaGCUCCGcGGG- -5'
29616 3' -62.5 NC_006151.1 + 128518 0.69 0.442033
Target:  5'- --aGCACCUCGCccgaGCcCGAGGCcacggcggGCCCg -3'
miRNA:   3'- acaCGUGGGGCGa---CGaGCUCCG--------CGGG- -5'
29616 3' -62.5 NC_006151.1 + 128209 0.69 0.407901
Target:  5'- aUG-GCGCCCCaggcguGCgacgaGCUCGuGGGCGCCa -3'
miRNA:   3'- -ACaCGUGGGG------CGa----CGAGC-UCCGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.