miRNA display CGI


Results 21 - 40 of 220 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29616 3' -62.5 NC_006151.1 + 17716 0.71 0.344818
Target:  5'- gUGUGCGCCCgGgUGCgcc-GGgGCCCa -3'
miRNA:   3'- -ACACGUGGGgCgACGagcuCCgCGGG- -5'
29616 3' -62.5 NC_006151.1 + 18546 0.7 0.375465
Target:  5'- --gGCACCCgGaacgGCcgCGAGGCcGCCCg -3'
miRNA:   3'- acaCGUGGGgCga--CGa-GCUCCG-CGGG- -5'
29616 3' -62.5 NC_006151.1 + 18742 0.68 0.496095
Target:  5'- cGU-CGCCgCCGCcgggGCcccaCGGGGUGCCCg -3'
miRNA:   3'- aCAcGUGG-GGCGa---CGa---GCUCCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 18918 0.67 0.562629
Target:  5'- gUGUGCACCUC-CUcGC-CGAaGGCGUCg -3'
miRNA:   3'- -ACACGUGGGGcGA-CGaGCU-CCGCGGg -5'
29616 3' -62.5 NC_006151.1 + 20114 0.66 0.601746
Target:  5'- --gGCGCCCCgGCgacgggGCUgGggggcGGGCGCCg -3'
miRNA:   3'- acaCGUGGGG-CGa-----CGAgC-----UCCGCGGg -5'
29616 3' -62.5 NC_006151.1 + 20266 0.67 0.556814
Target:  5'- cGUGgGCCCCaGCaccaugGCUaucuucccggggcccCG-GGCGCCCg -3'
miRNA:   3'- aCACgUGGGG-CGa-----CGA---------------GCuCCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 20913 0.66 0.621455
Target:  5'- --cGCGCCCgcuguaGUUGCUCGgcgaGGGC-CCCu -3'
miRNA:   3'- acaCGUGGGg-----CGACGAGC----UCCGcGGG- -5'
29616 3' -62.5 NC_006151.1 + 21466 0.67 0.562629
Target:  5'- cGUGguCCCgCGUcgccgGCUCGggcAGGCGgCCg -3'
miRNA:   3'- aCACguGGG-GCGa----CGAGC---UCCGCgGG- -5'
29616 3' -62.5 NC_006151.1 + 24344 0.66 0.621455
Target:  5'- gGUGCAucuCCCCGUUGaUCGcGGGCucGUCCc -3'
miRNA:   3'- aCACGU---GGGGCGACgAGC-UCCG--CGGG- -5'
29616 3' -62.5 NC_006151.1 + 26974 0.73 0.235069
Target:  5'- --cGCAgCgCGCUGCgcagCGGGGCGCUCu -3'
miRNA:   3'- acaCGUgGgGCGACGa---GCUCCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 27173 0.67 0.562629
Target:  5'- --gGCGCCgCGUg--UCGGGGCGCCa -3'
miRNA:   3'- acaCGUGGgGCGacgAGCUCCGCGGg -5'
29616 3' -62.5 NC_006151.1 + 28117 0.7 0.367633
Target:  5'- --gGCuCCUCGUcgGCUCGGGGCGCgCu -3'
miRNA:   3'- acaCGuGGGGCGa-CGAGCUCCGCGgG- -5'
29616 3' -62.5 NC_006151.1 + 28273 0.68 0.494243
Target:  5'- cGUGgGCCCCggggacgcgggcccgGCUcccccauuggccggcGCgucccCGGGGCGCCCg -3'
miRNA:   3'- aCACgUGGGG---------------CGA---------------CGa----GCUCCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 32317 0.66 0.57333
Target:  5'- gGUGUuuccuuCUCCGCguccccaucuccgagGCcCGAGGCGCCg -3'
miRNA:   3'- aCACGu-----GGGGCGa--------------CGaGCUCCGCGGg -5'
29616 3' -62.5 NC_006151.1 + 33208 0.77 0.141475
Target:  5'- --gGCGcCCCCGgaGCacgCGGGGCGCCCc -3'
miRNA:   3'- acaCGU-GGGGCgaCGa--GCUCCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 33945 0.77 0.138001
Target:  5'- --cGCGCCCCGgggGCUCGGggcgggacgcGGCGCCCg -3'
miRNA:   3'- acaCGUGGGGCga-CGAGCU----------CCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 35860 0.67 0.533742
Target:  5'- --cGCuCUCCGC-GCUC--GGCGCCCg -3'
miRNA:   3'- acaCGuGGGGCGaCGAGcuCCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 36634 0.68 0.468665
Target:  5'- --gGCGCCCgGCgGCg-GcGGCGCCCc -3'
miRNA:   3'- acaCGUGGGgCGaCGagCuCCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 36717 0.69 0.398807
Target:  5'- --aGCccGCCgCCGCgaggcgGCUCGAuccucggccgcuuGGCGCCCg -3'
miRNA:   3'- acaCG--UGG-GGCGa-----CGAGCU-------------CCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 36896 0.69 0.406238
Target:  5'- --aGacaGCCCCGCcgGCgccgcgccggaGAGGCGCCCu -3'
miRNA:   3'- acaCg--UGGGGCGa-CGag---------CUCCGCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.