Results 21 - 40 of 220 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29616 | 3' | -62.5 | NC_006151.1 | + | 109993 | 0.66 | 0.59192 |
Target: 5'- --cGCGagCCCGCcGag-GAGGCGCCCg -3' miRNA: 3'- acaCGUg-GGGCGaCgagCUCCGCGGG- -5' |
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29616 | 3' | -62.5 | NC_006151.1 | + | 78823 | 0.66 | 0.601746 |
Target: 5'- --aGUACCUguuucaGCUGUUUGGGcGCGCCUg -3' miRNA: 3'- acaCGUGGGg-----CGACGAGCUC-CGCGGG- -5' |
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29616 | 3' | -62.5 | NC_006151.1 | + | 24344 | 0.66 | 0.621455 |
Target: 5'- gGUGCAucuCCCCGUUGaUCGcGGGCucGUCCc -3' miRNA: 3'- aCACGU---GGGGCGACgAGC-UCCG--CGGG- -5' |
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29616 | 3' | -62.5 | NC_006151.1 | + | 69997 | 0.66 | 0.621455 |
Target: 5'- --aGCGUCagcaCGCU-CUCGAcGGCGCCCg -3' miRNA: 3'- acaCGUGGg---GCGAcGAGCU-CCGCGGG- -5' |
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29616 | 3' | -62.5 | NC_006151.1 | + | 20913 | 0.66 | 0.621455 |
Target: 5'- --cGCGCCCgcuguaGUUGCUCGgcgaGGGC-CCCu -3' miRNA: 3'- acaCGUGGGg-----CGACGAGC----UCCGcGGG- -5' |
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29616 | 3' | -62.5 | NC_006151.1 | + | 132463 | 0.66 | 0.621455 |
Target: 5'- --aGCACCgCGCgGCa-GuAGGCGUCCa -3' miRNA: 3'- acaCGUGGgGCGaCGagC-UCCGCGGG- -5' |
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29616 | 3' | -62.5 | NC_006151.1 | + | 8347 | 0.66 | 0.621455 |
Target: 5'- --cGCGCCCgccggaCGCggagGCgCGAGGCcCCCg -3' miRNA: 3'- acaCGUGGG------GCGa---CGaGCUCCGcGGG- -5' |
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29616 | 3' | -62.5 | NC_006151.1 | + | 81698 | 0.66 | 0.621455 |
Target: 5'- gGU-CGCCCgCGCgagguccaGC-CGGGGCGCCg -3' miRNA: 3'- aCAcGUGGG-GCGa-------CGaGCUCCGCGGg -5' |
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29616 | 3' | -62.5 | NC_006151.1 | + | 122542 | 0.66 | 0.621455 |
Target: 5'- cGUGUuccGgCCCGC--CUCGcGGCGCCUg -3' miRNA: 3'- aCACG---UgGGGCGacGAGCuCCGCGGG- -5' |
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29616 | 3' | -62.5 | NC_006151.1 | + | 123895 | 0.66 | 0.621455 |
Target: 5'- --cGCgGCCCCGCcgUGCggCGcGGCGgCCg -3' miRNA: 3'- acaCG-UGGGGCG--ACGa-GCuCCGCgGG- -5' |
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29616 | 3' | -62.5 | NC_006151.1 | + | 86303 | 0.66 | 0.620468 |
Target: 5'- cGUcaaCugCCCGCaGCUgGGGGCcgugcucGCCCg -3' miRNA: 3'- aCAc--GugGGGCGaCGAgCUCCG-------CGGG- -5' |
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29616 | 3' | -62.5 | NC_006151.1 | + | 80563 | 0.66 | 0.620468 |
Target: 5'- aUGU-CAUCCCGCcGuCUCcccgacgGAcGGCGCCCg -3' miRNA: 3'- -ACAcGUGGGGCGaC-GAG-------CU-CCGCGGG- -5' |
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29616 | 3' | -62.5 | NC_006151.1 | + | 20114 | 0.66 | 0.601746 |
Target: 5'- --gGCGCCCCgGCgacgggGCUgGggggcGGGCGCCg -3' miRNA: 3'- acaCGUGGGG-CGa-----CGAgC-----UCCGCGGg -5' |
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29616 | 3' | -62.5 | NC_006151.1 | + | 113795 | 0.66 | 0.601746 |
Target: 5'- --cGCACaCgCGCUGCU-GcGGCGCCa -3' miRNA: 3'- acaCGUG-GgGCGACGAgCuCCGCGGg -5' |
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29616 | 3' | -62.5 | NC_006151.1 | + | 106375 | 0.66 | 0.601746 |
Target: 5'- --cGCGCgCCCGCcGC----GGCGCCCg -3' miRNA: 3'- acaCGUG-GGGCGaCGagcuCCGCGGG- -5' |
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29616 | 3' | -62.5 | NC_006151.1 | + | 11016 | 0.66 | 0.605683 |
Target: 5'- --cGCcCgCCCGCUcGCUCGccgggccggccggccGGGgGCCCg -3' miRNA: 3'- acaCGuG-GGGCGA-CGAGC---------------UCCgCGGG- -5' |
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29616 | 3' | -62.5 | NC_006151.1 | + | 134312 | 0.66 | 0.608637 |
Target: 5'- -uUGCACgCCGCUGCgccucgCGccGGGCaucgccacggacguGCCCu -3' miRNA: 3'- acACGUGgGGCGACGa-----GC--UCCG--------------CGGG- -5' |
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29616 | 3' | -62.5 | NC_006151.1 | + | 84227 | 0.66 | 0.611593 |
Target: 5'- cGUGC-CCCUGCuggUGUUCGuGGC-CCa -3' miRNA: 3'- aCACGuGGGGCG---ACGAGCuCCGcGGg -5' |
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29616 | 3' | -62.5 | NC_006151.1 | + | 3124 | 0.66 | 0.611593 |
Target: 5'- --gGguCCCagGCcggGCgCGGGGCGCCCu -3' miRNA: 3'- acaCguGGGg-CGa--CGaGCUCCGCGGG- -5' |
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29616 | 3' | -62.5 | NC_006151.1 | + | 59872 | 0.66 | 0.611593 |
Target: 5'- --cGCAgCaCCGCUgGCUggCGaAGGCGUCCa -3' miRNA: 3'- acaCGUgG-GGCGA-CGA--GC-UCCGCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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